Change the url for UniRef* from ftp to https in databases downloader (#…

…496) The current ftp urls give an error as follows: `Invalid request. Privoxy doesn't support FTP.`
soedinglab · Oct 10, 2021 · e85ceb9 · e85ceb9
1 parent 49c2b70
commit e85ceb9
Showing 1 changed file with 6 additions and 6 deletions.
diff --git a/data/workflow/databases.sh b/data/workflow/databases.sh
@@ -66,24 +66,24 @@ INPUT_TYPE=""
 case "${SELECTION}" in
     "UniRef100")
         if notExists "${TMP_PATH}/uniref100.fasta.gz"; then
-            downloadFile "ftp://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref100/uniref100.release_note" "${TMP_PATH}/version"
-            downloadFile "ftp://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref100/uniref100.fasta.gz" "${TMP_PATH}/uniref100.fasta.gz"
+            downloadFile "https://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref100/uniref100.release_note" "${TMP_PATH}/version"
+            downloadFile "https://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref100/uniref100.fasta.gz" "${TMP_PATH}/uniref100.fasta.gz"
         fi
         push_back "${TMP_PATH}/uniref100.fasta.gz"
         INPUT_TYPE="FASTA_LIST"
     ;;
     "UniRef90")
         if notExists "${TMP_PATH}/uniref90.fasta.gz"; then
-            downloadFile "ftp://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref90/uniref90.release_note" "${TMP_PATH}/version"
-            downloadFile "ftp://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref90/uniref90.fasta.gz" "${TMP_PATH}/uniref90.fasta.gz"
+            downloadFile "https://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref90/uniref90.release_note" "${TMP_PATH}/version"
+            downloadFile "https://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref90/uniref90.fasta.gz" "${TMP_PATH}/uniref90.fasta.gz"
         fi
         push_back "${TMP_PATH}/uniref90.fasta.gz"
         INPUT_TYPE="FASTA_LIST"
     ;;
     "UniRef50")
         if notExists "${TMP_PATH}/uniref50.fasta.gz"; then
-            downloadFile "ftp://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref50/uniref50.release_note" "${TMP_PATH}/version"
-            downloadFile "ftp://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref50/uniref50.fasta.gz" "${TMP_PATH}/uniref50.fasta.gz"
+            downloadFile "https://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref50/uniref50.release_note" "${TMP_PATH}/version"
+            downloadFile "https://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref50/uniref50.fasta.gz" "${TMP_PATH}/uniref50.fasta.gz"
         fi
         push_back "${TMP_PATH}/uniref50.fasta.gz"
         INPUT_TYPE="FASTA_LIST"