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added shellcheck disable line
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AnnSeidel committed Jun 12, 2024
1 parent f99e97c commit 5ac4c80
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1 change: 1 addition & 0 deletions data/guidedNuclAssemble.sh
Original file line number Diff line number Diff line change
Expand Up @@ -103,6 +103,7 @@ while [ $STEP -lt $NUM_IT ]; do

# 3. Ungapped alignment protein 2 nucl
if notExists "${TMP_PATH_GUIDED_ASSEMBLY}/aln_nucl_$STEP.done"; then
# shellcheck disable=SC2086
"$MMSEQS" proteinaln2nucl "$INPUT_NUCL" "$INPUT_NUCL" "$INPUT_AA" "$INPUT_AA" "${TMP_PATH_GUIDED_ASSEMBLY}/aln_$STEP" "${TMP_PATH_GUIDED_ASSEMBLY}/aln_nucl_$STEP" ${PROTEIN_ALN_2_NUCL_PAR} \
|| fail "Ungapped alignment 2 nucl step died"
deleteIncremental "$PREV_ALN_NUCL"
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