fixing biopython 1.81

sokrypton · Dec 22, 2023 · 31f33cc · 31f33cc
1 parent 5bb28b0
commit 31f33cc
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/AlphaFold2.ipynb b/AlphaFold2.ipynb
@@ -152,6 +152,7 @@
         "  os.system(\"ln -s /usr/local/lib/python3.*/dist-packages/alphafold alphafold\")\n",
         "  # patch for jax > 0.3.25\n",
         "  os.system(\"sed -i 's/weights = jax.nn.softmax(logits)/logits=jnp.clip(logits,-1e8,1e8);weights=jax.nn.softmax(logits)/g' alphafold/model/modules.py\")\n",
+        "  os.system(\"pip install -q biopython==1.81\")\n",
         "  os.system(\"touch COLABFOLD_READY\")\n",
         "\n",
         "if USE_AMBER or USE_TEMPLATES:\n",