General refactoring for increased modularity and separation of concerns #605
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- Additional logging to allow better debuggability - Log calling parameters on colabfold's scripts internal functions - Create batches of msas before calling structure prediction on very high number sequence runs - Make changes to support one .m8 template file per sequence on the structure prediction step (colabfold batch) - General refactoring by separating functionality into functions thus increasing modularity and separation of concerns
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First of all, thanks a lot! I just want to give the heads up that this might take a bit to review as the PR is rather big (and us being permanently busy doesn't help either). |
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No problem! Let me know if you need any clarifications |
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@milot-mirdita should we merge this? |
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Added Features:
Although this seems like a very large change, functionality as well as usage of the tool from the user's perspective is still exactly the same.
All tests passing.