Update paf2delta.py

songtaogui · Nov 17, 2022 · 94f86fc · 94f86fc
1 parent 2983b65
commit 94f86fc
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/Call-Asm-Assemblytics/paf2delta.py b/Call-Asm-Assemblytics/paf2delta.py
@@ -21,7 +21,9 @@ def __init__(self, in_r_start, in_r_end, in_q_start, in_q_end, in_cigar, in_stra
         self._parse_cigar()
 
         if self.strand == "-":
-            self.parsed_cigar = self.parsed_cigar[::-1]
+            # self.parsed_cigar = self.parsed_cigar[::-1]
+            # note 2022.11.17: this would be a bug since the successor of this script did not have this operation:
+            # https://github.com/malonge/RagTag/blob/11f670b373fbbd4139df470ac676943665ac0f18/ragtag_paf2delta.py
             self.q_start, self.q_end = self.q_end, self.q_start
 
     def _parse_cigar(self):