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2024-benchmark-branchwater-plugin

Some simple benchmarking code for sourmash_plugin_branchwater.

See sourmash_plugin_branchwater#214.

Scripts:

  • run-gather.sh - run sourmash gather
  • run-fastgather-zip.sh - fastgather against zip
  • run-fastgather-manifest.sh - fastgather against manifest
  • run-fastgather-pathlist.sh - fastgather against fromfile
  • run-fastmultigather-rocksdb.sh - fastgather against indexed database
  • run-index-gtdb.sh - build indexed database

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Some simple benchmarking code for sourmash_plugin_branchwater

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