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[WIP] A request to remove wort dependecies in database workflow design #6
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In this PR I aimed to create workflows with @bluegenes's directsketch to eliminate the wort directory dependency from sourmash's database workflows.
genbank-workflow
contains two separate workflows to create new genbank sourmash databases or update existing genbank sourmash databasesallthebacteria
contains a single workflow that creates new AllTheBacteria sourmash databasesBoth workflows contain a test function by changing the
output_directory
of the config file totest
Remaining TODO:
allthebacteria
test from 1 to 5GTDB
workflow