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MRG: rework the manifest documentation; do misc cleanup #4994

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MRG: rework the manifest documentation; do misc cleanup

MRG: rework the manifest documentation; do misc cleanup #4994

Run time

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Job Run time
mamba
12m 13s
nix (ubuntu-latest)
19m 27s
nix (macos-14)
13m 24s
45m 4s