[pre-commit.ci] auto fixes from pre-commit.com hooks

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sourmash-bio · Apr 1, 2024 · 2bf440b · 2bf440b
1 parent 85340bc
commit 2bf440b
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Showing 2 changed files with 42 additions and 16 deletions.
diff --git a/tests/test_cmd_signature.py b/tests/test_cmd_signature.py
@@ -3362,14 +3362,22 @@ def test_sig_describe_1_hp(runtmp):
     testdata = utils.get_test_data("short.fa")
 
     # run four separate commands to make 4 different sets of sigs...
-    c.sourmash("sketch", "dna", "-p", "k=21,k=30,num=500",
-               "-o", "out.zip", testdata)
-    c.sourmash("sketch", "translate", "-p", "k=7,k=10,num=500",
-               "-o", "out.zip", testdata)
-    c.sourmash("sketch", "translate", "-p", "k=7,k=10,num=500,hp",
-               "-o", "out.zip", testdata)
-    c.sourmash("sketch", "translate", "-p", "k=7,k=10,num=500,dayhoff",
-               "-o", "out.zip", testdata)
+    c.sourmash("sketch", "dna", "-p", "k=21,k=30,num=500", "-o", "out.zip", testdata)
+    c.sourmash(
+        "sketch", "translate", "-p", "k=7,k=10,num=500", "-o", "out.zip", testdata
+    )
+    c.sourmash(
+        "sketch", "translate", "-p", "k=7,k=10,num=500,hp", "-o", "out.zip", testdata
+    )
+    c.sourmash(
+        "sketch",
+        "translate",
+        "-p",
+        "k=7,k=10,num=500,dayhoff",
+        "-o",
+        "out.zip",
+        testdata,
+    )
 
     # then combine into one .sig file
     c.sourmash("sig", "cat", "out.zip", "-o", "short.fa.sig")

diff --git a/tests/test_sourmash.py b/tests/test_sourmash.py
@@ -1795,10 +1795,19 @@ def test_compare_choose_molecule_dna(runtmp):
     testdata1 = utils.get_test_data("short.fa")
     testdata2 = utils.get_test_data("short2.fa")
 
-    runtmp.sourmash("sketch", "dna", "-p", "k=30,num=500",
-                    testdata1, testdata2, "-o", "sigs.zip")
-    runtmp.sourmash("sketch", "translate", "-p", "k=10,num=500",
-                    testdata1, testdata2, "-o", "sigs.zip")
+    runtmp.sourmash(
+        "sketch", "dna", "-p", "k=30,num=500", testdata1, testdata2, "-o", "sigs.zip"
+    )
+    runtmp.sourmash(
+        "sketch",
+        "translate",
+        "-p",
+        "k=10,num=500",
+        testdata1,
+        testdata2,
+        "-o",
+        "sigs.zip",
+    )
     runtmp.sourmash("compare", "--dna", "sigs.zip")
 
     print(runtmp.last_result.status, runtmp.last_result.out, runtmp.last_result.err)
@@ -1810,10 +1819,19 @@ def test_compare_choose_molecule_protein(runtmp):
     testdata1 = utils.get_test_data("short.fa")
     testdata2 = utils.get_test_data("short2.fa")
 
-    runtmp.sourmash("sketch", "dna", "-p", "k=30,num=500",
-                    testdata1, testdata2, "-o", "sigs.zip")
-    runtmp.sourmash("sketch", "translate", "-p", "k=10,num=500",
-                    testdata1, testdata2, "-o", "sigs.zip")
+    runtmp.sourmash(
+        "sketch", "dna", "-p", "k=30,num=500", testdata1, testdata2, "-o", "sigs.zip"
+    )
+    runtmp.sourmash(
+        "sketch",
+        "translate",
+        "-p",
+        "k=10,num=500",
+        testdata1,
+        testdata2,
+        "-o",
+        "sigs.zip",
+    )
     runtmp.sourmash("compare", "--protein", "sigs.zip")
 
     print(runtmp.last_result.status, runtmp.last_result.out, runtmp.last_result.err)