rkyv support in signature

try to skip md5sum

derive typed builder for GatherResult

expose md5

start moving mastiff

remove unused bigsi and sbt indices

Expose iterator methods for Signature

remove unused function

preparing for MinHashOps

Bump version, there will be many breaking changes...

more splits

default to large minhash, expose frozen

use enum for MinHash thru FFI

bug fixes and cleanup

add c++ stdlib package for mamba

fix finch feature

try out roaring

Add back check command

initial update impl

add semver check for rust

bump once_cell

fix rust ci

start bringing #1943

more selection

more picklist

use dashmap in mem_revindex

Revert "use dashmap in mem_revindex"

This reverts commit 22727b7091dee2dbafd10ce707578c5085aa6cfc.

bump rocksdb to 0.19

bump rocksdb to 0.20, bump MSRV to 1.60

update deps

add cargo deny config

use cibuildwheel configs in pyproject.toml

flake cleanup

fix cargo.lock

tox updates

don't worry with in-mem sigs for now

rename mastiff to branchwater

add revindex test

wip collection

clippy fixes

start using camino for paths

cargo fmt

Implement MemStorage and from_paths and from_sigs

cleanup

Replace DatasetID with Idx

Use 32-bits Idx, instead of 64

use enum_dispatch to avoid repeating code

implement selection more widely

working with protein in tests...

add semver-checks

save/load collection from rocksdb

.github/workflows/dev_envs.yml

@@ -57,7 +57,7 @@ jobs:
 
     - name: install dependencies
       shell: bash -l {0}
-      run: mamba install 'tox>=3.27,<4' tox-conda rust git compilers pandoc
+      run: mamba install 'tox>=3.27,<4' tox-conda rust git compilers pandoc libstdcxx-ng
 
     - name: run tests for 3.9
       shell: bash -l {0}

.github/workflows/rust.yml

@@ -234,6 +234,12 @@ jobs:
           toolchain: stable
           override: true
 
+      - name: Check semver
+        uses: obi1kenobi/cargo-semver-checks-action@v2
+        with:
+          crate-name: sourmash
+          version-tag-prefix: r
+
       - name: Make sure we can publish the sourmash crate
         uses: actions-rs/cargo@v1
         with: