Merge branch 'latest' into lins-v2

.github/workflows/build_wheel.yml

@@ -45,7 +45,7 @@ jobs:
           python-version: '3.9'
 
       - name: Build wheels
-        uses: pypa/cibuildwheel@v2.12.0
+        uses: pypa/cibuildwheel@v2.12.1
         env:
           CIBW_ENVIRONMENT_MACOS: ${{ matrix.macos_target }}
           CIBW_ARCHS_LINUX: ${{ matrix.arch }}

.github/workflows/build_wheel_all_archs.yml

@@ -66,7 +66,7 @@ jobs:
           platforms: all
 
       - name: Build wheels
-        uses: pypa/cibuildwheel@v2.12.0
+        uses: pypa/cibuildwheel@v2.12.1
         env:
           CIBW_ENVIRONMENT_MACOS: ${{ matrix.macos_target }}
           CIBW_ARCHS_LINUX: ${{ matrix.arch }}

.github/workflows/rust.yml

@@ -268,11 +268,11 @@ jobs:
 
       - uses: actions-rs/toolchain@v1
         with:
-          toolchain: 1.56.1
+          toolchain: "1.60.0"
           override: true
 
       - name: check if README matches MSRV defined here
-        run: grep '1.56.1' src/core/README.md
+        run: grep '1.60.0' src/core/README.md
 
       - name: Check if it builds properly
         uses: actions-rs/cargo@v1

pyproject.toml

@@ -113,7 +113,7 @@ demo = [
 ]
 doc = [
   "sphinx>=4.4.0,<7",
-  "myst-parser==0.19.1",
+  "myst-parser==1.0.0",
   "Jinja2==3.1.2",
   "alabaster",
   "sphinxcontrib-napoleon",

src/core/Cargo.toml

@@ -11,7 +11,7 @@ edition = "2021"
 readme = "README.md"
 autoexamples = false
 autobins = false
-rust-version = "1.56.1"
+rust-version = "1.60.0"
 
 [lib]
 name = "sourmash"
@@ -40,11 +40,11 @@ nohash-hasher = "0.2.0"
 num-iter = "0.1.43"
 once_cell = "1.17.1" # once_cell 1.14+ requires Rust 1.56+
 rayon = { version = "1.7.0", optional = true }
-serde = { version = "1.0.152", features = ["derive"] }
-serde_json = "1.0.94"
+serde = { version = "1.0.158", features = ["derive"] }
+serde_json = "1.0.95"
 primal-check = "0.3.1"
 thiserror = "1.0"
-typed-builder = "0.13.0"
+typed-builder = "0.14.0"
 twox-hash = "1.6.0"
 vec-collections = "0.3.4"
 piz = "0.4.0"  # piz 0.5.1 requires Rust 1.63+
@@ -54,7 +54,7 @@ ouroboros = "0.15.6"
 [dev-dependencies]
 assert_matches = "1.3.0"
 criterion = "0.3.2"
-needletail = { version = "0.5.0", default-features = false }
+needletail = { version = "0.5.1", default-features = false }
 proptest = { version = "1.1.0", default-features = false, features = ["std"]}
 rand = "0.8.2"
 getrandom = { version = "0.2", features = ["js"] }
@@ -87,7 +87,7 @@ version = "0.3.61"
 features = ["console", "File"]
 
 [target.'cfg(all(target_arch = "wasm32"))'.dependencies.chrono]
-version = "0.4.23"
+version = "0.4.24"
 features = ["wasmbind"]