remove 'dump' command (#1157)

sourmash-bio · Aug 17, 2020 · 7b261f5 · 7b261f5
1 parent eb35860
commit 7b261f5
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Showing 3 changed files with 1 addition and 31 deletions.
diff --git a/sourmash/cli/__init__.py b/sourmash/cli/__init__.py
@@ -19,7 +19,6 @@
 from . import categorize
 from . import compare
 from . import compute
-from . import dump
 from . import gather
 from . import import_csv
 from . import info
@@ -100,7 +99,7 @@ def get_parser():
     alias = {
         "sig": "signature"
     }
-    expert = set(['categorize', 'dump', 'import_csv', 'migrate', 'multigather', 'sbt_combine', 'watch'])
+    expert = set(['categorize', 'import_csv', 'migrate', 'multigather', 'sbt_combine', 'watch'])
 
     clidir = os.path.dirname(__file__)
     basic_ops = utils.command_list(clidir)

diff --git a/sourmash/cli/dump.py b/sourmash/cli/dump.py
diff --git a/sourmash/commands.py b/sourmash/commands.py
@@ -306,21 +306,6 @@ def import_csv(args):
             sig.save_signatures(siglist, outfp)
 
 
-def dump(args):
-    "Dump hashes for each input signature into a {name}.dump.txt file."
-    for filename in args.filenames:
-        notify('loading {}', filename)
-        siglist = sig.load_signatures(filename, ksize=args.ksize)
-        siglist = list(siglist)
-        assert len(siglist) == 1
-
-        s = siglist[0]
-
-        fp = open(filename + '.dump.txt', 'w')
-        fp.write(" ".join((map(str, s.minhash.get_hashes()))))
-        fp.close()
-
-
 def sbt_combine(args):
     inp_files = list(args.sbts)
     notify('combining {} SBTs', len(inp_files))