rkyv support in signature

try to skip md5sum

derive typed builder for GatherResult

expose md5

start moving mastiff

remove unused bigsi and sbt indices

Expose iterator methods for Signature

remove unused function

preparing for MinHashOps

Bump version, there will be many breaking changes...

more splits

default to large minhash, expose frozen

use enum for MinHash thru FFI

bug fixes and cleanup

add c++ stdlib package for mamba

fix finch feature

try out roaring

Add back check command

initial update impl

add semver check for rust

bump once_cell

fix rust ci

start bringing #1943

more selection

more picklist

use dashmap in mem_revindex

Revert "use dashmap in mem_revindex"

This reverts commit 22727b7091dee2dbafd10ce707578c5085aa6cfc.

bump rocksdb to 0.19

bump rocksdb to 0.20, bump MSRV to 1.60

update deps

add cargo deny config

use cibuildwheel configs in pyproject.toml

flake cleanup

fix cargo.lock

tox updates

don't worry with in-mem sigs for now

.github/workflows/build_wheel.yml

@@ -27,7 +27,7 @@ jobs:
           - build: macos-x86_64
             os: macos-latest
             arch: x86_64
-            macos_target: 'MACOSX_DEPLOYMENT_TARGET=10.11 CARGO_BUILD_TARGET=x86_64-apple-darwin'
+            macos_target: 'MACOSX_DEPLOYMENT_TARGET=11.0 CARGO_BUILD_TARGET=x86_64-apple-darwin'
           - build: macos-arm64
             os: macos-latest
             arch: arm64

.github/workflows/dev_envs.yml

@@ -57,7 +57,7 @@ jobs:
 
     - name: install dependencies
       shell: bash -l {0}
-      run: mamba install tox-conda rust git compilers pandoc
+      run: mamba install tox>=4.2 tox-conda rust git compilers pandoc libstdcxx-ng
 
     - name: run tests for 3.9
       shell: bash -l {0}

.github/workflows/rust.yml

@@ -63,17 +63,6 @@ jobs:
           toolchain: ${{ matrix.rust }}
           override: true
 
-      - name: Set up Python 3.8
-        uses: actions/setup-python@v4
-        with:
-          python-version: "3.8"
-
-      - name: Install dependencies
-        continue-on-error: ${{ matrix.continue }}
-        run: |
-          python -m pip install --upgrade pip
-          python -m pip install -e .
-
       - name: Run tests
         uses: actions-rs/cargo@v1
         with:
@@ -90,16 +79,6 @@ jobs:
           toolchain: stable
           override: true
 
-      - name: Set up Python 3.8
-        uses: actions/setup-python@v4
-        with:
-          python-version: "3.8"
-
-      - name: Install dependencies
-        run: |
-          python -m pip install --upgrade pip
-          python -m pip install -e .
-
       - uses: actions-rs/install@v0.1
         with:
           crate: cargo-all-features
@@ -255,6 +234,12 @@ jobs:
           toolchain: stable
           override: true
 
+      - name: Check semver
+        uses: obi1kenobi/cargo-semver-checks-action@v2
+        with:
+          crate-name: sourmash
+          version-tag-prefix: r
+
       - name: Make sure we can publish the sourmash crate
         uses: actions-rs/cargo@v1
         with: