[MRG] add sig collect command
#2036
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Codecov Report
@@ Coverage Diff @@
## latest #2036 +/- ##
==========================================
+ Coverage 84.16% 91.73% +7.57%
==========================================
Files 129 99 -30
Lines 15134 10960 -4174
Branches 2133 2151 +18
==========================================
- Hits 12737 10054 -2683
+ Misses 2098 607 -1491
Partials 299 299
Flags with carried forward coverage won't be shown. Click here to find out more.
Continue to review full report at Codecov.
|
…o add/sig_collect
|
Ready for review & merge @sourmash-bio/devs! |
bluegenes
approved these changes
May 13, 2022
Co-authored-by: Tessa Pierce Ward <bluegenes@users.noreply.github.com>
Co-authored-by: Tessa Pierce Ward <bluegenes@users.noreply.github.com>
|
thank you :) |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Adds
sourmash sig collectby integrating sigs-to-manifest.py into sourmash.This is the code that's used to maintain a manifest of wort-genomes signatures, among other things - see #1965.
The main motivation behind this command addition is that it's really enabling for certain use cases, as shown most clearly by the way the documentation simplifies 😃 .
Guide into rendered docs from this PR: