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[MRG] debias all containment values #2243

Merged
merged 18 commits into from
Dec 7, 2022
Merged

[MRG] debias all containment values #2243

merged 18 commits into from
Dec 7, 2022

Commits on May 17, 2022

  1. add bf to ani containment calculations

    @bluegenes
    bluegenes committed May 17, 2022
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  2. write bf a diff way

    @bluegenes
    bluegenes committed May 17, 2022
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Commits on Jul 19, 2022

  1. Merge branch 'latest' into use-bf

    @bluegenes
    bluegenes committed Jul 19, 2022
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Commits on Jul 24, 2022

  1. Merge branch 'latest' into use-bf

    @bluegenes
    bluegenes committed Jul 24, 2022
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Commits on Aug 25, 2022

  1. Merge branch 'latest' into use-bf

    @bluegenes
    bluegenes committed Aug 25, 2022
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Commits on Aug 29, 2022

  1. Merge branch 'latest' into use-bf

    @bluegenes
    bluegenes committed Aug 29, 2022
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  2. Merge branch 'use-bf' of github.com:sourmash-bio/sourmash into use-bf

    @bluegenes
    bluegenes committed Aug 29, 2022
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  3. debiased containment

    @bluegenes
    bluegenes committed Aug 29, 2022
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  4. basic tests for debiased containment mh fns

    @bluegenes
    bluegenes committed Aug 29, 2022
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  5. constrain debiased containment

    @bluegenes
    bluegenes committed Aug 29, 2022
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  6. debias all containment vals

    @bluegenes
    bluegenes committed Aug 29, 2022
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  7. use is None instead of ==

    @bluegenes
    bluegenes committed Aug 29, 2022
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  8. restore passing in precalculated containment/max_containment

    @bluegenes
    bluegenes committed Aug 29, 2022
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  9. better comment

    @bluegenes
    bluegenes committed Aug 29, 2022
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Commits on Aug 30, 2022

  1. Merge branch 'latest' into debias-everything

    @bluegenes
    bluegenes committed Aug 30, 2022
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Commits on Dec 1, 2022

  1. Merge branch 'latest' into debias-everything

    @bluegenes
    bluegenes committed Dec 1, 2022
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  2. fix space

    @bluegenes
    bluegenes committed Dec 1, 2022
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Commits on Dec 7, 2022

  1. Merge branch 'latest' into debias-everything

    @ctb
    ctb committed Dec 7, 2022
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