Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

MRG: rework the manifest documentation; do misc cleanup #3027

Merged
merged 39 commits into from
Mar 20, 2024
Merged

MRG: rework the manifest documentation; do misc cleanup #3027

merged 39 commits into from
Mar 20, 2024

Commits on Feb 22, 2024

  1. rework the manifest documentation

    @ctb
    ctb committed Feb 22, 2024
    Configuration menu
    Copy the full SHA
    7ee0052 View commit details
    Browse the repository at this point in the history

Commits on Mar 1, 2024

  1. load manifest paths relative to cwd

    @ctb
    ctb committed Mar 1, 2024
    Configuration menu
    Copy the full SHA
    5f6ef82 View commit details
    Browse the repository at this point in the history

  2. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Mar 1, 2024
    Configuration menu
    Copy the full SHA
    2405e9d View commit details
    Browse the repository at this point in the history

  3. more better tests

    @ctb
    ctb committed Mar 1, 2024
    Configuration menu
    Copy the full SHA
    df87087 View commit details
    Browse the repository at this point in the history

  4. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Mar 1, 2024
    Configuration menu
    Copy the full SHA
    d7da0aa View commit details
    Browse the repository at this point in the history

Commits on Mar 2, 2024

  1. implement --abspath, --relpath for sig check

    @ctb
    ctb committed Mar 2, 2024
    Configuration menu
    Copy the full SHA
    0caee7f View commit details
    Browse the repository at this point in the history

  2. clean up relpath a bit

    @ctb
    ctb committed Mar 2, 2024
    Configuration menu
    Copy the full SHA
    1fba4ee View commit details
    Browse the repository at this point in the history

  3. add --relpath to sig collect

    @ctb
    ctb committed Mar 2, 2024
    Configuration menu
    Copy the full SHA
    f3079b9 View commit details
    Browse the repository at this point in the history

Commits on Mar 3, 2024

  1. implement --relpath for sig collect too

    @ctb
    ctb committed Mar 3, 2024
    Configuration menu
    Copy the full SHA
    b17cd4f View commit details
    Browse the repository at this point in the history

  2. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Mar 3, 2024
    Configuration menu
    Copy the full SHA
    72a9062 View commit details
    Browse the repository at this point in the history

  3. straighten out tests

    @ctb
    ctb committed Mar 3, 2024
    Configuration menu
    Copy the full SHA
    5cf4749 View commit details
    Browse the repository at this point in the history

  4. add abspath/relpath to sig collect tests

    @ctb
    ctb committed Mar 3, 2024
    Configuration menu
    Copy the full SHA
    d6dfe35 View commit details
    Browse the repository at this point in the history

  5. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Mar 3, 2024
    Configuration menu
    Copy the full SHA
    da3f165 View commit details
    Browse the repository at this point in the history

  6. add abspath/relpath tests for sig collect

    @ctb
    ctb committed Mar 3, 2024
    Configuration menu
    Copy the full SHA
    b185be9 View commit details
    Browse the repository at this point in the history

  7. Merge branch 'manifest_relpath' of https://github.com/sourmash-bio/so… 

    …urmash into manifest_relpath
    @ctb
    ctb committed Mar 3, 2024
    Configuration menu
    Copy the full SHA
    9d2018c View commit details
    Browse the repository at this point in the history

  8. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Mar 3, 2024
    Configuration menu
    Copy the full SHA
    28e0a5b View commit details
    Browse the repository at this point in the history

  9. fix/update comments

    @ctb
    ctb committed Mar 3, 2024
    Configuration menu
    Copy the full SHA
    e9b9a34 View commit details
    Browse the repository at this point in the history

  10. update docs for sig check and sig collect

    @ctb
    ctb committed Mar 3, 2024
    Configuration menu
    Copy the full SHA
    f88c662 View commit details
    Browse the repository at this point in the history

  11. add in some documentation about relpath in sourmash internals

    @ctb
    ctb committed Mar 3, 2024
    Configuration menu
    Copy the full SHA
    4e10802 View commit details
    Browse the repository at this point in the history

  12. path rewriting tests for sig check

    @ctb
    ctb committed Mar 3, 2024
    Configuration menu
    Copy the full SHA
    6dd3e3a View commit details
    Browse the repository at this point in the history

  13. update docs

    @ctb
    ctb committed Mar 3, 2024
    Configuration menu
    Copy the full SHA
    e3bb509 View commit details
    Browse the repository at this point in the history

  14. add --relpath tests for sig collect

    @ctb
    ctb committed Mar 3, 2024
    Configuration menu
    Copy the full SHA
    703585c View commit details
    Browse the repository at this point in the history

  15. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Mar 3, 2024
    Configuration menu
    Copy the full SHA
    346ed82 View commit details
    Browse the repository at this point in the history

  16. a few more tests

    @ctb
    ctb committed Mar 3, 2024
    Configuration menu
    Copy the full SHA
    637b1fc View commit details
    Browse the repository at this point in the history

  17. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Mar 3, 2024
    Configuration menu
    Copy the full SHA
    8b1bc2c View commit details
    Browse the repository at this point in the history

  18. Merge branch 'manifest_relpath' into update_sig_collect

    @ctb
    ctb committed Mar 3, 2024
    Configuration menu
    Copy the full SHA
    5937cb0 View commit details
    Browse the repository at this point in the history

Commits on Mar 4, 2024

  1. more documentation foo

    @ctb
    ctb committed Mar 4, 2024
    Configuration menu
    Copy the full SHA
    c9bf80e View commit details
    Browse the repository at this point in the history

  2. more docs

    @ctb
    ctb committed Mar 4, 2024
    Configuration menu
    Copy the full SHA
    5d9f219 View commit details
    Browse the repository at this point in the history

Commits on Mar 8, 2024

  1. Merge branch 'latest' of https://github.com/sourmash-bio/sourmash int… 

    …o update_sig_collect
    @ctb
    ctb committed Mar 8, 2024
    Configuration menu
    Copy the full SHA
    a13b77e View commit details
    Browse the repository at this point in the history

Commits on Mar 9, 2024

  1. Merge branch 'latest' of https://github.com/sourmash-bio/sourmash int… 

    …o update_sig_collect
    @ctb
    ctb committed Mar 9, 2024
    Configuration menu
    Copy the full SHA
    cbc7fbc View commit details
    Browse the repository at this point in the history

Commits on Mar 10, 2024

  1. Merge branch 'latest' of https://github.com/sourmash-bio/sourmash int… 

    …o update_sig_collect
    @ctb
    ctb committed Mar 10, 2024
    Configuration menu
    Copy the full SHA
    bad1a71 View commit details
    Browse the repository at this point in the history

Commits on Mar 12, 2024

  1. Merge branch 'latest' of https://github.com/sourmash-bio/sourmash int… 

    …o update_sig_collect
    @ctb
    ctb committed Mar 12, 2024
    Configuration menu
    Copy the full SHA
    104042a View commit details
    Browse the repository at this point in the history

Commits on Mar 17, 2024

  1. more updates

    @ctb
    ctb committed Mar 17, 2024
    Configuration menu
    Copy the full SHA
    3741203 View commit details
    Browse the repository at this point in the history

  2. more

    @ctb
    ctb committed Mar 17, 2024
    Configuration menu
    Copy the full SHA
    eba2541 View commit details
    Browse the repository at this point in the history

  3. Merge branch 'latest' of github.com:sourmash-bio/sourmash into update… 

    …_sig_collect
    @ctb
    ctb committed Mar 17, 2024
    Configuration menu
    Copy the full SHA
    c42fd00 View commit details
    Browse the repository at this point in the history

Commits on Mar 19, 2024

  1. Merge branch 'latest' of github.com:sourmash-bio/sourmash into update… 

    …_sig_collect
    @ctb
    ctb committed Mar 19, 2024
    Configuration menu
    Copy the full SHA
    0d9ec6d View commit details
    Browse the repository at this point in the history

  2. misc fixes

    @ctb
    ctb committed Mar 19, 2024
    Configuration menu
    Copy the full SHA
    c34421d View commit details
    Browse the repository at this point in the history

Commits on Mar 20, 2024

  1. Update doc/command-line.md 

    Co-authored-by: Tessa Pierce Ward <bluegenes@users.noreply.github.com>
    @ctb @bluegenes
    ctb and bluegenes committed Mar 20, 2024
    Configuration menu
    Copy the full SHA
    cb6bae3 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'latest' into update_sig_collect

    @ctb
    ctb committed Mar 20, 2024
    Configuration menu
    Copy the full SHA
    8711c3d View commit details
    Browse the repository at this point in the history