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MRG: prepare to remove sourmash compute for sourmash v5.0 #3103

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merged 2 commits into from
Apr 12, 2024
Merged

MRG: prepare to remove sourmash compute for sourmash v5.0 #3103

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2c63616
remove dependencies on 'compute' code from other modules
ctb Apr 1, 2024
34025f3
Merge branch 'latest' into remove_compute_v5
ctb Apr 12, 2024
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12 changes: 9 additions & 3 deletions src/sourmash/command_compute.py
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Original file line number Diff line number Diff line change
Expand Up @@ -13,9 +13,15 @@
from .utils import RustObject
from ._lowlevel import ffi, lib

DEFAULT_COMPUTE_K = "21,31,51"
DEFAULT_MMHASH_SEED = 42
DEFAULT_LINE_COUNT = 1500

from .command_sketch import (
_compute_individual,
_compute_merged,
ComputeParameters,
add_seq,
set_sig_name,
DEFAULT_MMHASH_SEED,
)


def compute(args):
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