Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Minor fix to #533 #584

Merged
merged 1 commit into from
Dec 21, 2018
Merged

Minor fix to #533 #584

merged 1 commit into from
Dec 21, 2018

Conversation

ctb
Copy link
Contributor

@ctb ctb commented Dec 20, 2018

Forgot to push this before merging! Arghh! #533

  • Is it mergeable?
  • make test Did it pass the tests?
  • make coverage Is the new code covered?
  • Did it change the command-line interface? Only additions are allowed
    without a major version increment. Changing file formats also requires a
    major version number increment.
  • Was a spellchecker run on the source code and documentation after
    changes were made?

@codecov
Copy link

codecov bot commented Dec 21, 2018

Codecov Report

Merging #584 into master will increase coverage by <.01%.
The diff coverage is 100%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #584      +/-   ##
==========================================
+ Coverage   88.54%   88.54%   +<.01%     
==========================================
  Files          25       25              
  Lines        3754     3755       +1     
  Branches       37       37              
==========================================
+ Hits         3324     3325       +1     
  Misses        430      430
Impacted Files Coverage Δ
sourmash/commands.py 89.23% <100%> (+0.01%) ⬆️

Continue to review full report at Codecov.

Legend - Click here to learn more
Δ = absolute <relative> (impact), ø = not affected, ? = missing data
Powered by Codecov. Last update 954d729...fc5944d. Read the comment docs.

@luizirber luizirber merged commit 726913b into master Dec 21, 2018
@luizirber luizirber deleted the add/search_gather_lca_db branch December 21, 2018 20:46
ctb pushed a commit that referenced this pull request Mar 27, 2024
Updates the requirements on
[pytest-cov](https://github.com/pytest-dev/pytest-cov) to permit the
latest version.
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst">pytest-cov's
changelog</a>.</em></p>
<blockquote>
<h2>5.0.0 (2024-03-24)</h2>
<ul>
<li>Removed support for xdist rsync (now deprecated).
Contributed by Matthias Reichenbach in
<code>[#623](pytest-dev/pytest-cov#623)
&lt;https://github.com/pytest-dev/pytest-cov/pull/623&gt;</code>_.</li>
<li>Switched docs theme to Furo.</li>
<li>Various legacy Python cleanup and CI improvements.
Contributed by Christian Clauss and Hugo van Kemenade in
<code>[#630](pytest-dev/pytest-cov#630)
&lt;https://github.com/pytest-dev/pytest-cov/pull/630&gt;</code><em>,
<code>[#631](pytest-dev/pytest-cov#631)
&lt;https://github.com/pytest-dev/pytest-cov/pull/631&gt;</code></em>,
<code>[#632](pytest-dev/pytest-cov#632)
&lt;https://github.com/pytest-dev/pytest-cov/pull/632&gt;</code>_ and
<code>[#633](pytest-dev/pytest-cov#633)
&lt;https://github.com/pytest-dev/pytest-cov/pull/633&gt;</code>_.</li>
<li>Added a <code>pyproject.toml</code> example in the docs.
Contributed by Dawn James in
<code>[#626](pytest-dev/pytest-cov#626)
&lt;https://github.com/pytest-dev/pytest-cov/pull/626&gt;</code>_.</li>
<li>Modernized project's pre-commit hooks to use ruff. Initial POC
contributed by
Christian Clauss in
<code>[#584](pytest-dev/pytest-cov#584)
&lt;https://github.com/pytest-dev/pytest-cov/pull/584&gt;</code>_.</li>
</ul>
<h2>4.1.0 (2023-05-24)</h2>
<ul>
<li>Updated CI with new Pythons and dependencies.</li>
<li>Removed rsyncdir support. This makes pytest-cov compatible with
xdist 3.0.
Contributed by Sorin Sbarnea in
<code>[#558](pytest-dev/pytest-cov#558)
&lt;https://github.com/pytest-dev/pytest-cov/pull/558&gt;</code>_.</li>
<li>Optimized summary generation to not be performed if no reporting is
active (for example,
when <code>--cov-report=''</code> is used without
<code>--cov-fail-under</code>).
Contributed by Jonathan Stewmon in
<code>[#589](pytest-dev/pytest-cov#589)
&lt;https://github.com/pytest-dev/pytest-cov/pull/589&gt;</code>_.</li>
<li>Added support for JSON reporting.
Contributed by Matthew Gamble in
<code>[#582](pytest-dev/pytest-cov#582)
&lt;https://github.com/pytest-dev/pytest-cov/pull/582&gt;</code>_.</li>
<li>Refactored code to use f-strings.
Contributed by Mark Mayo in
<code>[#572](pytest-dev/pytest-cov#572)
&lt;https://github.com/pytest-dev/pytest-cov/pull/572&gt;</code>_.</li>
<li>Fixed a skip in the test suite for some old xdist.
Contributed by a bunch of people in
<code>[#565](pytest-dev/pytest-cov#565)
&lt;https://github.com/pytest-dev/pytest-cov/pull/565&gt;</code>_.</li>
</ul>
<h2>4.0.0 (2022-09-28)</h2>
<p><strong>Note that this release drops support for
multiprocessing.</strong></p>
<ul>
<li>
<p><code>--cov-fail-under</code> no longer causes <code>pytest
--collect-only</code> to fail
Contributed by Zac Hatfield-Dodds in
<code>[#511](pytest-dev/pytest-cov#511)
&lt;https://github.com/pytest-dev/pytest-cov/pull/511&gt;</code>_.</p>
</li>
<li>
<p>Dropped support for multiprocessing (mostly because <code>issue 82408
&lt;https://github.com/python/cpython/issues/82408&gt;</code>_). This
feature was
mostly working but very broken in certain scenarios and made the test
suite very flaky and slow.</p>
<p>There is builtin multiprocessing support in coverage and you can
migrate to that. All you need is this in your
<code>.coveragerc</code>::</p>
<p>[run]
concurrency = multiprocessing</p>
</li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/5295ce01c84262cec88f31255e9ac538718f3047"><code>5295ce0</code></a>
Bump version: 4.1.0 → 5.0.0</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/1181b067972bf94569f8011f3b18f271690f9ab1"><code>1181b06</code></a>
Update changelog.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/9757222e2e044361e70125ebdd96e5eb87395983"><code>9757222</code></a>
Fix a minor grammar error (<a
href="https://github.com/pytest-dev/pytest-cov/issues/636">#636</a>)</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/9f5cd81a0dbe3fe41681efdbef516c08988fe8ff"><code>9f5cd81</code></a>
Cleanup releasing instructions. Closes <a
href="https://github.com/pytest-dev/pytest-cov/issues/616">#616</a>.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/93b5047ec5050d63c10a6fe16a09b671a7a03df8"><code>93b5047</code></a>
Add test for pyproject.toml loading without explicit --cov-config. Ref
<a
href="https://github.com/pytest-dev/pytest-cov/issues/508">#508</a>.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/ff50860d7c67b920503745d92a3f0944cf41f982"><code>ff50860</code></a>
docs: add config instructions for pyproject.toml.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/4a5a4b5fa4b1c63ddcab5cbc1813798c9b6f1d36"><code>4a5a4b5</code></a>
Keep GitHub Actions up to date with GitHub's Dependabot</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/1d7f55963d5138f41c452a946f7cca7e0b6ee8b2"><code>1d7f559</code></a>
Fix or remove URLs that are causing docs tests to fail</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/6a5af8e85b8242ac815f33e26adf9068f5f0ebc3"><code>6a5af8e</code></a>
Update changelog.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/d9fe8dfed15023d3410dd299c5092e755b8981c2"><code>d9fe8df</code></a>
Switch to furo. Closes <a
href="https://github.com/pytest-dev/pytest-cov/issues/618">#618</a>.</li>
<li>Additional commits viewable in <a
href="https://github.com/pytest-dev/pytest-cov/compare/v4.0.0...v5.0.0">compare
view</a></li>
</ul>
</details>
<br />


Dependabot will resolve any conflicts with this PR as long as you don't
alter it yourself. You can also trigger a rebase manually by commenting
`@dependabot rebase`.

[//]: # (dependabot-automerge-start)
[//]: # (dependabot-automerge-end)

---

<details>
<summary>Dependabot commands and options</summary>
<br />

You can trigger Dependabot actions by commenting on this PR:
- `@dependabot rebase` will rebase this PR
- `@dependabot recreate` will recreate this PR, overwriting any edits
that have been made to it
- `@dependabot merge` will merge this PR after your CI passes on it
- `@dependabot squash and merge` will squash and merge this PR after
your CI passes on it
- `@dependabot cancel merge` will cancel a previously requested merge
and block automerging
- `@dependabot reopen` will reopen this PR if it is closed
- `@dependabot close` will close this PR and stop Dependabot recreating
it. You can achieve the same result by closing it manually
- `@dependabot show <dependency name> ignore conditions` will show all
of the ignore conditions of the specified dependency
- `@dependabot ignore this major version` will close this PR and stop
Dependabot creating any more for this major version (unless you reopen
the PR or upgrade to it yourself)
- `@dependabot ignore this minor version` will close this PR and stop
Dependabot creating any more for this minor version (unless you reopen
the PR or upgrade to it yourself)
- `@dependabot ignore this dependency` will close this PR and stop
Dependabot creating any more for this dependency (unless you reopen the
PR or upgrade to it yourself)


</details>

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
ctb pushed a commit that referenced this pull request Nov 5, 2024
Updates the requirements on
[pytest-cov](https://github.com/pytest-dev/pytest-cov) to permit the
latest version.
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst">pytest-cov's
changelog</a>.</em></p>
<blockquote>
<h2>6.0.0 (2024-10-29)</h2>
<ul>
<li>Updated various documentation inaccuracies, especially on subprocess
handling.</li>
<li>Changed fail under checks to use the precision set in the coverage
configuration.
Now it will perform the check just like <code>coverage report</code>
would.</li>
<li>Added a <code>--cov-precision</code> cli option that can override
the value set in your coverage configuration.</li>
<li>Dropped support for now EOL Python 3.8.</li>
</ul>
<h2>5.0.0 (2024-03-24)</h2>
<ul>
<li>Removed support for xdist rsync (now deprecated).
Contributed by Matthias Reichenbach in
<code>[#623](pytest-dev/pytest-cov#623)
&lt;https://github.com/pytest-dev/pytest-cov/pull/623&gt;</code>_.</li>
<li>Switched docs theme to Furo.</li>
<li>Various legacy Python cleanup and CI improvements.
Contributed by Christian Clauss and Hugo van Kemenade in
<code>[#630](pytest-dev/pytest-cov#630)
&lt;https://github.com/pytest-dev/pytest-cov/pull/630&gt;</code><em>,
<code>[#631](pytest-dev/pytest-cov#631)
&lt;https://github.com/pytest-dev/pytest-cov/pull/631&gt;</code></em>,
<code>[#632](pytest-dev/pytest-cov#632)
&lt;https://github.com/pytest-dev/pytest-cov/pull/632&gt;</code>_ and
<code>[#633](pytest-dev/pytest-cov#633)
&lt;https://github.com/pytest-dev/pytest-cov/pull/633&gt;</code>_.</li>
<li>Added a <code>pyproject.toml</code> example in the docs.
Contributed by Dawn James in
<code>[#626](pytest-dev/pytest-cov#626)
&lt;https://github.com/pytest-dev/pytest-cov/pull/626&gt;</code>_.</li>
<li>Modernized project's pre-commit hooks to use ruff. Initial POC
contributed by
Christian Clauss in
<code>[#584](pytest-dev/pytest-cov#584)
&lt;https://github.com/pytest-dev/pytest-cov/pull/584&gt;</code>_.</li>
</ul>
<h2>4.1.0 (2023-05-24)</h2>
<ul>
<li>Updated CI with new Pythons and dependencies.</li>
<li>Removed rsyncdir support. This makes pytest-cov compatible with
xdist 3.0.
Contributed by Sorin Sbarnea in
<code>[#558](pytest-dev/pytest-cov#558)
&lt;https://github.com/pytest-dev/pytest-cov/pull/558&gt;</code>_.</li>
<li>Optimized summary generation to not be performed if no reporting is
active (for example,
when <code>--cov-report=''</code> is used without
<code>--cov-fail-under</code>).
Contributed by Jonathan Stewmon in
<code>[#589](pytest-dev/pytest-cov#589)
&lt;https://github.com/pytest-dev/pytest-cov/pull/589&gt;</code>_.</li>
<li>Added support for JSON reporting.
Contributed by Matthew Gamble in
<code>[#582](pytest-dev/pytest-cov#582)
&lt;https://github.com/pytest-dev/pytest-cov/pull/582&gt;</code>_.</li>
<li>Refactored code to use f-strings.
Contributed by Mark Mayo in
<code>[#572](pytest-dev/pytest-cov#572)
&lt;https://github.com/pytest-dev/pytest-cov/pull/572&gt;</code>_.</li>
<li>Fixed a skip in the test suite for some old xdist.
Contributed by a bunch of people in
<code>[#565](pytest-dev/pytest-cov#565)
&lt;https://github.com/pytest-dev/pytest-cov/pull/565&gt;</code>_.</li>
</ul>
<h2>4.0.0 (2022-09-28)</h2>
<p><strong>Note that this release drops support for
multiprocessing.</strong></p>
<ul>
<li><code>--cov-fail-under</code> no longer causes <code>pytest
--collect-only</code> to fail</li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/95404375a0e436178e012e20b8865c23c54c8a50"><code>9540437</code></a>
Bump version: 5.0.0 → 6.0.0</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/9f8175467afc67db9001fb364ad1f2dfe79b51f1"><code>9f81754</code></a>
Further trim down envs and drop Python 3.8.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/b12b5ec65da4c66bbc0c35918957f9f875f465c3"><code>b12b5ec</code></a>
Update conf.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/23f4b27b432a54fcc3b6df7363f0e73e568233fb"><code>23f4b27</code></a>
Update changelog.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/291a04f49566054bb19644aba27c3799ac8b7f42"><code>291a04f</code></a>
Bump test deps and trim config.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/08f1101455ba293dda388fdb3b61e62fd95a827d"><code>08f1101</code></a>
Add <code>--cov-precision</code> option. Close <a
href="https://github.com/pytest-dev/pytest-cov/issues/655">#655</a>.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/76fe2a7e48e5c9c53644994c5ba5a421c84286f5"><code>76fe2a7</code></a>
Move the warnings/errors in a place that doesn't import anything.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/a9ea7b71711479d4c5ccc5e21e2eb1694b259cb0"><code>a9ea7b7</code></a>
Implement error/warning for the bad dynamic_context being set in
config.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/c299e01b6422284a6a7f7322e6b9bf8f44aa3c25"><code>c299e01</code></a>
Add explicit suffixing to make it easier to see the identify the
sources/usag...</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/c87e54643ef696ed2b0e2b9a4209581da8467fcb"><code>c87e546</code></a>
Add reproducer for weird xdist dynamic_context interaction. Ref <a
href="https://github.com/pytest-dev/pytest-cov/issues/604">#604</a>.</li>
<li>Additional commits viewable in <a
href="https://github.com/pytest-dev/pytest-cov/compare/v4.0.0...v6.0.0">compare
view</a></li>
</ul>
</details>
<br />


Dependabot will resolve any conflicts with this PR as long as you don't
alter it yourself. You can also trigger a rebase manually by commenting
`@dependabot rebase`.

[//]: # (dependabot-automerge-start)
[//]: # (dependabot-automerge-end)

---

<details>
<summary>Dependabot commands and options</summary>
<br />

You can trigger Dependabot actions by commenting on this PR:
- `@dependabot rebase` will rebase this PR
- `@dependabot recreate` will recreate this PR, overwriting any edits
that have been made to it
- `@dependabot merge` will merge this PR after your CI passes on it
- `@dependabot squash and merge` will squash and merge this PR after
your CI passes on it
- `@dependabot cancel merge` will cancel a previously requested merge
and block automerging
- `@dependabot reopen` will reopen this PR if it is closed
- `@dependabot close` will close this PR and stop Dependabot recreating
it. You can achieve the same result by closing it manually
- `@dependabot show <dependency name> ignore conditions` will show all
of the ignore conditions of the specified dependency
- `@dependabot ignore this major version` will close this PR and stop
Dependabot creating any more for this major version (unless you reopen
the PR or upgrade to it yourself)
- `@dependabot ignore this minor version` will close this PR and stop
Dependabot creating any more for this minor version (unless you reopen
the PR or upgrade to it yourself)
- `@dependabot ignore this dependency` will close this PR and stop
Dependabot creating any more for this dependency (unless you reopen the
PR or upgrade to it yourself)


</details>

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants