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@ctb ctb released this 17 Aug 14:16
· 419 commits to latest since this release
v4.8.3
52449f6
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Learn about vigilant mode.

Minor new features:

  • add support for -E/--extension to sig split (#2712)
  • add a sourmash.cli.parse_args([...]) function (#2691)
  • update plugin support for argparse usage/description/epilog (#2696)

Cleanup and documentation updates:

  • add gtdb-rs214 info (#2618, #2621, #2690)
  • update JOSS paper for v4 (#1361)
  • fix tutorial notebook links (#2633)
  • Update URL for sourmash/fig.py (#2586)
  • change matching_hashes.sig to matching-hashes.sig in documentation (#2713)
  • patch lineage_summary documentation (#2693)
  • switch dib-lab links to sourmash-bio links in .md files (#2588)

Developer updates:

  • add upload token for codecov (#2632)
  • build: fix clippy lints and MSRV check (#2680)
  • maturin: move deprecated definition from Cargo.toml to pyproject.toml (#2597)
  • update the core documentation building packages: Sphinx, myst-parser, and docutils (#2657)
  • update the dependabot config to allow automatic rebases (#2634)
  • update version to 4.8.3-dev (#2584)
  • Build: bump maturin to 1.x (#2650)
  • Clippy beta (1.70) fix (#2596)
  • Fix clippy lint introduced in 1.71 beta (#2630)
  • fix release procedure based on v4.8.0 release (#2551)
  • Update docutils requirement from <0.20,>=0.17.1 to >=0.17.1,<0.21 (#2611)
  • Update pytest requirement from <7.4.0,>=6.2.4 to >=6.2.4,<7.5.0 (#2659)
  • Fix: update a manifest test to use temp directory (#2689)

Dependabot updates:

  • Bump cachix/install-nix-action from 20 to 21 (#2625)
  • Bump cachix/install-nix-action from 21 to 22 (#2651)
  • Bump chrono from 0.4.24 to 0.4.25 (#2628)
  • Bump chrono from 0.4.25 to 0.4.26 (#2636)
  • Bump criterion from 0.3.6 to 0.5.1 (#2629)
  • Bump getrandom from 0.2.9 to 0.2.10 (#2645)
  • Bump log from 0.4.17 to 0.4.18 (#2623)
  • Bump log from 0.4.18 to 0.4.19 (#2641)
  • Bump log from 0.4.19 to 0.4.20 (#2715)
  • Bump memmap2 from 0.5.10 to 0.6.1 (#2613)
  • Bump memmap2 from 0.6.1 to 0.6.2 (#2626)
  • Bump memmap2 from 0.6.2 to 0.7.0 (#2643)
  • Bump memmap2 from 0.7.0 to 0.7.1 (#2658)
  • Bump once_cell from 1.17.1 to 1.17.2 (#2622)
  • Bump once_cell from 1.17.2 to 1.18.0 (#2635)
  • Bump ouroboros from 0.15.6 to 0.17.0 (#2654)
  • Bump ouroboros from 0.17.0 to 0.17.2 (#2687)
  • Bump proptest from 1.1.0 to 1.2.0 (#2627)
  • Bump pypa/cibuildwheel from 2.12.1 to 2.12.3 (#2590)
  • Bump pypa/cibuildwheel from 2.12.3 to 2.13.0 (#2624)
  • Bump pypa/cibuildwheel from 2.13.0 to 2.13.1 (#2642)
  • Bump pypa/cibuildwheel from 2.13.1 to 2.14.0 (#2673)
  • Bump pypa/cibuildwheel from 2.14.0 to 2.14.1 (#2681)
  • Bump pypa/cibuildwheel from 2.14.1 to 2.15.0 (#2716)
  • Bump serde from 1.0.160 to 1.0.162 (#2609)
  • Bump serde from 1.0.162 to 1.0.163 (#2612)
  • Bump serde from 1.0.163 to 1.0.164 (#2644)
  • Bump serde from 1.0.164 to 1.0.166 (#2666)
  • Bump serde from 1.0.166 to 1.0.168 (#2679)
  • Bump serde_json from 1.0.100 to 1.0.103 (#2682)
  • Bump serde_json from 1.0.103 to 1.0.104 (#2701)
  • Bump serde_json from 1.0.96 to 1.0.97 (#2653)
  • Bump serde_json from 1.0.97 to 1.0.99 (#2660)
  • Bump serde_json from 1.0.99 to 1.0.100 (#2675)
  • Bump supercharge/redis-github-action from 1.5.0 to 1.6.0 (#2700)
  • Bump tempfile from 3.5.0 to 3.6.0 (#2639)
  • Bump tempfile from 3.6.0 to 3.7.0 (#2686)
  • Bump tempfile from 3.7.0 to 3.7.1 (#2705)
  • Bump thiserror from 1.0.40 to 1.0.43 (#2674)
  • Bump thiserror from 1.0.43 to 1.0.44 (#2685)
  • Bump wasm-bindgen from 0.2.84 to 0.2.86 (#2615)
  • Bump wasm-bindgen from 0.2.86 to 0.2.87 (#2640)
  • Bump wasm-bindgen-test from 0.3.34 to 0.3.36 (#2620)
  • Bump wasm-bindgen-test from 0.3.36 to 0.3.37 (#2656)
  • Bump web-sys from 0.3.61 to 0.3.63 (#2619)
  • Bump web-sys from 0.3.63 to 0.3.64 (#2655)
Assets 11
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