BUG: Remove IPFS daemon from CI setup #82
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No longer needed since we are now using HTTP gateways to fetch the test data.
dzenanz
approved these changes
Oct 11, 2023
Addresses:
```
axis_units = { d:str(getattr(ome.images[0].pixels, f"physical_size_{d}_quantity").units) for d in dims}
axis_units
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
Cell In [10], line 1
----> 1 axis_units = { d:str(getattr(ome.images[0].pixels, f"physical_size_{d}_quantity").units) for d in dims}
2 axis_units
Cell In [10], line 1, in <dictcomp>(.0)
----> 1 axis_units = { d:str(getattr(ome.images[0].pixels, f"physical_size_{d}_quantity").units) for d in dims}
2 axis_units
File ~/bin/mambaforge/envs/spatial-image/lib/python3.9/site-packages/ome_types/_mixins/_base_type.py:177, in OMEType.__getattr__(self, key)
170 warnings.warn(
171 f"Attribute '{cls_name}.{key}' is deprecated, use {new_key!r} instead",
172 DeprecationWarning,
173 stacklevel=2,
174 )
175 return getattr(self, new_key)
--> 177 return super().__getattr__(key)
AttributeError: 'super' object has no attribute '__getattr__'
```
ome.types does not contain the correspond entry anymore. Manually add the 'micrometer' unit, identified in the OME XML metadata print out in an earlier cell in the format specified by OME-Zarr.
RefResolver has been deprecated, other calls no longer succeed with newer versions. Migration guide: https://python-jsonschema.readthedocs.io/en/stable/referencing/#migrating-from-refresolver
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No longer needed since we are now using HTTP gateways to fetch the test data.