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+ wipe all but Numerics/Core matlab archives before installation + manually remove a lot of GUI-related libraries and resources: - libQt - map tiles - non-english localization - libcef (chrome embedded) - opengl* - jxbrowser - web-resources for various matlab toolboxes
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| FROM ubuntu:bionic | ||
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| MAINTAINER Guillaume Flandin <g.flandin@ucl.ac.uk> | ||
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| RUN apt-get update \ | ||
| && apt-get -y install unzip libxt6 wget \ | ||
| && apt-get clean \ | ||
| && rm -rf \ | ||
| /tmp/hsperfdata* \ | ||
| /var/*/apt/*/partial \ | ||
| /var/lib/apt/lists/* \ | ||
| /var/log/apt/term* | ||
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| # Install MATLAB MCR in /opt/mcr/ | ||
| # To save space we are removing all archives except Core and Numerics, and | ||
| # we're kiling some of the larger blobs in the mcr as wel: Qt5 and cuda-related | ||
| # libraries and map tiles. This list could be amended over time. | ||
| ENV MATLAB_VERSION R2018b | ||
| ENV MCR_VERSION v95 | ||
| RUN mkdir /opt/mcr_install \ | ||
| && mkdir /opt/mcr \ | ||
| && wget -P /opt/mcr_install --progress=bar:force https://www.mathworks.com/supportfiles/downloads/${MATLAB_VERSION}/deployment_files/${MATLAB_VERSION}/installers/glnxa64/MCR_${MATLAB_VERSION}_glnxa64_installer.zip \ | ||
| && unzip -q /opt/mcr_install/MCR_${MATLAB_VERSION}_glnxa64_installer.zip -d /opt/mcr_install \ | ||
| && rm /opt/mcr_install/archives/*GPU* \ | ||
| && rm /opt/mcr_install/archives/*Hadoop* \ | ||
| && rm /opt/mcr_install/archives/*Java* \ | ||
| && rm /opt/mcr_install/archives/*MPS* \ | ||
| && rm /opt/mcr_install/archives/*NET* \ | ||
| && rm /opt/mcr_install/archives/*Web_Apps* \ | ||
| && /opt/mcr_install/install -destinationFolder /opt/mcr -agreeToLicense yes -mode silent \ | ||
| && rm -rf /opt/mcr_install /tmp/* \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/etc \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/bin/glnxa64/libQt5* \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/bin/glnxa64/qtwebengine* \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/mcr/toolbox/matlab/maps \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/resources/*/ja_JP \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/resources/*/ko_KR \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/resources/*/zh_CN \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/cefclient \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/bin/glnxa64/cef_* \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/sys/opengl \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/sys/jxbrowser \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/java/jarext/jxbrowser* \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/sys/tex \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/sys/java/jre/glnxa64/jre/lib/amd64/libjfxwebkit.so \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/toolbox/matlab/datools \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/toolbox/matlab/codetools \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/toolbox/matlab/uitools \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/toolbox/matlab/system \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/toolbox/matlab/codeanalysis \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/toolbox/matlab/pathdataservice \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/toolbox/coder \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/toolbox/glee \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/toolbox/simulink \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/toolbox/shared/dastudio \ | ||
| && rm -rf /opt/mcr/${MCR_VERSION}/toolbox/shared/mlreportgen | ||
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| # Install SPM Standalone in /opt/spm12/ | ||
| ENV SPM_VERSION 12 | ||
| ENV SPM_REVISION r7487 | ||
| ENV LD_LIBRARY_PATH /opt/mcr/${MCR_VERSION}/runtime/glnxa64:/opt/mcr/${MCR_VERSION}/bin/glnxa64:/opt/mcr/${MCR_VERSION}/sys/os/glnxa64:/opt/mcr/${MCR_VERSION}/sys/opengl/lib/glnxa64 | ||
| ENV MCR_INHIBIT_CTF_LOCK 1 | ||
| ENV SPM_HTML_BROWSER 0 | ||
| # Running spm once with "function exit" tests the succesfull installation *and* | ||
| # extracts the ctf archive which is necessary if singularity is going to be | ||
| # used later on, because singularity containers are read-only. | ||
| RUN wget -P /opt --progress=bar:force https://www.fil.ion.ucl.ac.uk/spm/download/restricted/bids/spm${SPM_VERSION}_${SPM_REVISION}_Linux_${MATLAB_VERSION}.zip \ | ||
| && unzip -q /opt/spm${SPM_VERSION}_${SPM_REVISION}_Linux_${MATLAB_VERSION}.zip -d /opt \ | ||
| && rm -f /opt/spm${SPM_VERSION}_${SPM_REVISION}_Linux_${MATLAB_VERSION}.zip \ | ||
| && find /opt/spm${SPM_VERSION}/ -name '*mexw32*' -name '*mexw64*' -name '*mexmaci64*' -delete \ | ||
| && /opt/spm${SPM_VERSION}/spm${SPM_VERSION} function exit \ | ||
| && chmod +x /opt/spm${SPM_VERSION}/${SPM_VERSION} | ||
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| # Configure entry point | ||
| ENTRYPOINT ["/opt/spm12/spm12"] | ||
| CMD ["--help"] |