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Steinegger Lab

Steinegger Lab Github repositories

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  1. foldseek foldseek Public

    Foldseek enables fast and sensitive comparisons of large structure sets.

    C 851 103

  2. foldcomp foldcomp Public

    Compressing protein structures effectively with torsion angles

    C++ 164 14

  3. Metabuli Metabuli Public

    Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

    C++ 123 10

  4. ufcg ufcg Public

    UFCG: Universal Fungal Core Genes

    Java 32

  5. conterminator conterminator Public

    Detection of incorrectly labeled sequences across kingdoms

    C 80 7

  6. foldmason foldmason Public

    Multiple Protein Structure Alignment at Scale with FoldMason

    C 144 14

Repositories

Showing 10 of 28 repositories
  • unicore Public

    Universal and efficient core gene phylogeny with Foldseek and ProstT5

    steineggerlab/unicore’s past year of commit activity
    Rust 27 GPL-3.0 1 1 (1 issue needs help) 0 Updated Dec 24, 2024
  • Metabuli Public

    Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

    steineggerlab/Metabuli’s past year of commit activity
    C++ 123 GPL-3.0 10 15 0 Updated Dec 24, 2024
  • Metabuli-regression Public

    Regression tests for Metabuli

    steineggerlab/Metabuli-regression’s past year of commit activity
    Shell 0 GPL-3.0 0 0 0 Updated Dec 23, 2024
  • steineggerlab/foldmason-analysis’s past year of commit activity
    Shell 1 0 0 0 Updated Dec 18, 2024
  • bfvd-analysis Public

    Big Fantastic Virus Database (BFVD): Code used for analyses

    steineggerlab/bfvd-analysis’s past year of commit activity
    Shell 1 0 0 0 Updated Dec 16, 2024
  • foldseek Public

    Foldseek enables fast and sensitive comparisons of large structure sets.

    steineggerlab/foldseek’s past year of commit activity
    C 851 GPL-3.0 103 192 4 Updated Dec 8, 2024
  • alphafold Public Forked from google-deepmind/alphafold

    Open source code for AlphaFold.

    steineggerlab/alphafold’s past year of commit activity
    Python 11 Apache-2.0 2,318 0 2 Updated Dec 4, 2024
  • steineggerlab/afdb-clusters-web’s past year of commit activity
    Jupyter Notebook 2 GPL-3.0 2 1 0 Updated Dec 4, 2024
  • foldmason Public

    Multiple Protein Structure Alignment at Scale with FoldMason

    steineggerlab/foldmason’s past year of commit activity
    C 144 GPL-3.0 14 9 0 Updated Dec 4, 2024
  • SeekRank Public

    Rank homologous protein sequences based on a regressor trained on experimental measures

    steineggerlab/SeekRank’s past year of commit activity
    Jupyter Notebook 6 MIT 0 0 0 Updated Dec 3, 2024

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