These are repositories for software and protocols created and used by the Stenglein Lab at Colorado State University
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Colorado State University
- Fort Collins, CO
- http://stengleinlab.org
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viral_variant_caller
viral_variant_caller PublicA nextflow pipeline to call single nucleotide and structural variants in viral populations
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taxonomy_pipeline
taxonomy_pipeline PublicA nextflow pipeline to taxonomically assess the sequences in an NGS dataset, with a focus on identifying and characterizing virus sequences
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tick_surveillance
tick_surveillance PublicBioinformatics pipeline for analysis of amplicon sequencing of tick-associated microbes
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bunya_dvg_analyses
bunya_dvg_analyses PublicAnalyses of DVG forms in ~100 bunyavirus datasets
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