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Changed boundaries for GTR param values #160

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Jan 25, 2022
Merged

Changed boundaries for GTR param values #160

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4 changes: 2 additions & 2 deletions doc/phyml-manual.tex
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Expand Up @@ -606,9 +606,9 @@ \subsection{Command-line interface}
\item \x{--free\_rates} or \x{--freerates} \index{command-line options!\x{--free\_rates}}\\
As an alternative to the discrete gamma model, it is possible to estimate the (relative) rate in
each class of the (mixture) model and the corresponding frequencies directly from the data. This
model, called the FreeRate model, has more parameters
model, called FreeRate, has more parameters
than the discrete gamma one but usually provides a significantly better fit to the data. See
\cite{soubrier12} for more information about this model and an illustration of its use.
\cite{soubrier12} for more information about this model and an illustration of its use.

\item \x{--il} \index{command-line options!\x{--il}}\\ \x{il} stands here for integrated (branch)
length. This model, described in \cite{guindon13} in the context of molecular dating, provides an
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4 changes: 2 additions & 2 deletions src/utilities.h
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Expand Up @@ -171,8 +171,8 @@ static inline int isinf_ld (long double x) { return isnan (x - x); }
#define PINV_MIN 0.00001
#define PINV_MAX 0.99999

#define RR_MIN 0.01
#define RR_MAX 100.0
#define RR_MIN 0.001
#define RR_MAX 1000.0

#define UNSCALED_RR_MIN log(RR_MIN)
#define UNSCALED_RR_MAX log(RR_MAX)
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