replace named arguments

stephenslab · Jan 4, 2024 · 545d6a0 · 545d6a0
1 parent ced5370
commit 545d6a0
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/inst/experiments/fit_droplets_glmpca.R b/inst/experiments/fit_droplets_glmpca.R
@@ -16,8 +16,8 @@ fit <- glmpca::glmpca(
   Y = Matrix::t(counts),
   L = n_factor,
   fam = "poi",
-  optimizer = optimizer,
-  minibatch = minibatch,
+  optimizer = "avagrad",
+  minibatch = "stochastic",
   ctl = list(
     minIter = 1e8 - 1,
     maxIter = 1e8,

diff --git a/inst/experiments/fit_pbmc_glmpca.R b/inst/experiments/fit_pbmc_glmpca.R
@@ -16,8 +16,8 @@ fit <- glmpca::glmpca(
   Y = Matrix::t(counts),
   L = n_factor,
   fam = "poi",
-  optimizer = optimizer,
-  minibatch = minibatch,
+  optimizer = "avagrad",
+  minibatch = "stochastic",
   ctl = list(
     minIter = 1e8 - 1,
     maxIter = 1e8,