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gdc cache seurat analysis tsv to hdf5 uuid to be used in gene exp… #2422

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merged 4 commits into from
Nov 23, 2024

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@xzhou82 xzhou82 commented Nov 22, 2024

… query

Description

closes #2401
request to GDC prod scrna_seq/gene_expression breaks, maybe it hasn't been released
Congyu will test with gdc vpn

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Check each task that has been performed or verified to be not applicable.

  • Tests: added and/or passed unit and integration tests, or N/A
  • Todos: commented or documented, or N/A
  • Notable Changes: updated release.txt, prefixed a commit message with "fix:" or "feat:", added to an internal tracking document, or N/A

@xzhou82 xzhou82 changed the title wip gdc cache seurat analysis tsv to hdf5 uuid to be used in gene exp… gdc cache seurat analysis tsv to hdf5 uuid to be used in gene exp… Nov 22, 2024
@xzhou82 xzhou82 marked this pull request as draft November 22, 2024 20:49
@xzhou82 xzhou82 marked this pull request as ready for review November 22, 2024 21:02
@xzhou82 xzhou82 merged commit 5c1ca9f into master Nov 23, 2024
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@xzhou82 xzhou82 deleted the issue.2401 branch November 23, 2024 03:32
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gdc singlecell: cache analysis.tsv to loom hdf5 file uuid mapping at start, to enable querying sc gene exp
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