Applying clang-format

src/dagmc/DagMC.hpp

@@ -75,10 +75,11 @@ class DagMC {
   DagMC(std::shared_ptr<Interface> mb_impl = nullptr,
         double overlap_tolerance = 0., double numerical_precision = .001);
   // Deprecated Constructor
-  [[deprecated(
-      "Replaced by DagMC(std::shared_ptr<Interface> mb_impl, ... "
-      ")")]] DagMC(Interface* mb_impl, double overlap_tolerance = 0.,
-                   double numerical_precision = .001);
+  [
+      [deprecated("Replaced by DagMC(std::shared_ptr<Interface> mb_impl, ... "
+                  ")")]] DagMC(Interface* mb_impl,
+                               double overlap_tolerance = 0.,
+                               double numerical_precision = .001);
   // Destructor
   ~DagMC();
 
@@ -472,24 +473,23 @@ class DagMC {
   int set_verbosity(int val) {
     int verbosity_max = 0;
     int verbosity_min = 1;
-    if (val < verbosity_min || val > verbosity_max) warning("Invalid verbosity value " + std::to_string(val) + " will be set to nearest valid value.");
+    if (val < verbosity_min || val > verbosity_max)
+      warning("Invalid verbosity value " + std::to_string(val) +
+              " will be set to nearest valid value.");
     val = std::min(std::max(verbosity_min, val), verbosity_max);
     return verbosity = val;
   }
 
-  int get_verbosity(int val) {
-    return verbosity;
-  }
+  int get_verbosity(int val) { return verbosity; }
 
   /** console output mechanism
    *  @param msg Message to be written to the console
    *  @param lvl Message will not be written if the verbosity level
    *             is higher than the class instance's current verbosity setting.
    *             Use of -1 ensures the message will always be written.
    *  @param newline Whether or not to apend a newline to the message.
-  */
-  void message(const std::string& msg, int lvl = 1, bool newline = true) const
-  {
+   */
+  void message(const std::string& msg, int lvl = 1, bool newline = true) const {
     // do not write message if level is higher than
     // verbosity setting
     if (lvl > verbosity) return;
@@ -503,18 +503,16 @@ class DagMC {
   /** write a warning message to the console
    *  @param msg Message to be written to the console
    *  @param newline Whether or not to apend a newline to the message.
-  */
-  void warning(const std::string& msg, bool newline = true) const
-  {
+   */
+  void warning(const std::string& msg, bool newline = true) const {
     message("WARNING: " + msg, -1, newline);
   }
 
   /** write an error message to the console
    *  @param msg Message to be written to the console
    *  @param newline Whether or not to apend a newline to the message.
-  */
-  void err_msg(const std::string& msg, bool newline = true) const
-  {
+   */
+  void err_msg(const std::string& msg, bool newline = true) const {
     message("ERROR: " + msg, -1, newline);
   }
 
@@ -539,7 +537,8 @@ class DagMC {
   std::unique_ptr<RayTracer> ray_tracer;
 
   /** verbosity setting for DAGMC operations */
-  int verbosity {1};
+  int verbosity{1};
+
  public:
   Tag nameTag, facetingTolTag;
 

src/dagmc/dagmcmetadata.cpp

@@ -2,8 +2,8 @@
 
 #include <algorithm>
 #include <iostream>
-#include <sstream>
 #include <set>
+#include <sstream>
 
 #include "util.hpp"
 
@@ -285,10 +285,12 @@ void dagmcMetaData::parse_importance_data() {
         importance_map[eh][pair.first] = imp;
       } else {
         std::stringstream ss;
-        ss << "Volume with ID " << volid << " has more than one importance " << std::endl;
+        ss << "Volume with ID " << volid << " has more than one importance "
+           << std::endl;
         ss << "Assigned for particle type " << pair.first << std::endl;
         ss << "Only one importance value per volume per particle type "
-                     "is allowed" << std::endl;
+              "is allowed"
+           << std::endl;
         message(ss.str(), -1, false);
         exit(EXIT_FAILURE);
       }
@@ -363,14 +365,13 @@ void dagmcMetaData::parse_boundary_data() {
     if (boundary_assignment.size() != 1) {
       std::stringstream ss;
       ss << "More than one boundary conditions specified for " << surfid
-                << std::endl;
-      ss << surfid << " has the following density assignments"
-                << std::endl;
+         << std::endl;
+      ss << surfid << " has the following density assignments" << std::endl;
       for (int j = 0; j < boundary_assignment.size(); j++) {
         ss << boundary_assignment[j] << std::endl;
       }
       ss << "Please check your boundary condition assignments " << surfid
-                << std::endl;
+         << std::endl;
       err_msg(ss.str());
       exit(EXIT_FAILURE);
     }
@@ -623,8 +624,9 @@ std::pair<std::string, std::string> dagmcMetaData::split_string(
     int str_length = property_string.length() - found_delimiter;
     second = property_string.substr(found_delimiter + 1, str_length);
   } else {
-    warning("Didn't find any delimiter.\n "
-            "Returning empty strings");
+    warning(
+        "Didn't find any delimiter.\n "
+        "Returning empty strings");
   }
 
   return {first, second};

src/dagmc/dagmcmetadata.hpp

@@ -1,8 +1,8 @@
 #ifndef SRC_DAGMC_DAGMCMETADATA_HPP_
 #define SRC_DAGMC_DAGMCMETADATA_HPP_
 #include <iostream>
-#include <sstream>
 #include <set>
+#include <sstream>
 
 #include "DagMC.hpp"
 
@@ -117,24 +117,23 @@ class dagmcMetaData {
   int set_verbosity(int val) {
     int verbosity_max = 0;
     int verbosity_min = 1;
-    if (val < verbosity_min || val > verbosity_max) warning("Invalid verbosity value " + std::to_string(val) + " will be set to nearest valid value.");
+    if (val < verbosity_min || val > verbosity_max)
+      warning("Invalid verbosity value " + std::to_string(val) +
+              " will be set to nearest valid value.");
     val = std::min(std::max(verbosity_min, val), verbosity_max);
     return verbosity = val;
   }
 
-  int get_verbosity(int val) {
-    return verbosity;
-  }
+  int get_verbosity(int val) { return verbosity; }
 
   /** console output mechanism
    *  @param msg Message to be written to the console
    *  @param lvl Message will not be written if the verbosity level
    *             is higher than the class instance's current verbosity setting.
    *             Use of -1 ensures the message will always be written.
    *  @param newline Whether or not to apend a newline to the message.
-  */
-  void message(const std::string& msg, int lvl = 1, bool newline = true) const
-  {
+   */
+  void message(const std::string& msg, int lvl = 1, bool newline = true) const {
     // do not write message if level is higher than
     // verbosity setting
     if (lvl > verbosity) return;
@@ -148,25 +147,23 @@ class dagmcMetaData {
   /** write a warning message to the console
    *  @param msg Message to be written to the console
    *  @param newline Whether or not to apend a newline to the message.
-  */
-  void warning(const std::string& msg, bool newline = true) const
-  {
+   */
+  void warning(const std::string& msg, bool newline = true) const {
     message("WARNING: " + msg, -1, newline);
   }
 
   /** write an error message to the console
    *  @param msg Message to be written to the console
    *  @param newline Whether or not to apend a newline to the message.
-  */
-  void err_msg(const std::string& msg, bool newline = true) const
-  {
+   */
+  void err_msg(const std::string& msg, bool newline = true) const {
     message("ERROR: " + msg, -1, newline);
   }
 
   // private member variables
  private:
   moab::DagMC* DAG;  // Pointer to DAGMC instance
-  int verbosity {1};      // Provide additional output while setting up and parsing
+  int verbosity{1};  // Provide additional output while setting up and parsing
                      // properties
   bool require_density;  // Require that all volumes have a specified density
                          // value