Major reorg on cmaboss #508
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name: MacOS | |
on: | |
push: | |
pull_request: | |
release: | |
types: [created] | |
jobs: | |
maboss_macos: | |
name: MaBoSS | |
runs-on: macos-12 | |
env: | |
CC: gcc-12 | |
CXX: g++-12 | |
INSTALL_PATH: /usr/local | |
BUILD_PATH: /tmp/ | |
LIBXML_LIBDIR: /usr/local/opt/libxml2/lib/libxml2.2.dylib | |
LIBXML_INCLUDEDIR: /usr/local/opt/libxml2/include/libxml2/ | |
MACOSX_DEPLOYMENT_TARGET: 12.0 | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Install dependencies | |
run : | | |
brew install gcc flex bison cmake | |
brew install libxml2 hdf5 | |
pip install numpy | |
- name: Set cmake version variable | |
run: | | |
echo "CMAKE_VERSION=$(cmake --version | head -n 1)" >> $GITHUB_ENV | |
- name: Cache compiled libSBML | |
id: cache-libsbml-gcc | |
uses: actions/cache@v4 | |
with: | |
path: /tmp/libsbml-5.20.4 | |
key: ${{ runner.os }}-${{ env.CMAKE_VERSION }}.libSBML-5.20.4-g++12-namespace | |
- name: Compiling libSBML | |
if: steps.cache-libsbml-gcc.outputs.cache-hit != 'true' | |
run: bash scripts/build_libsbml.sh | |
- name: Install libSBML | |
run: sudo bash scripts/install_libsbml.sh | |
- name: Build MaBoSS | |
run: | | |
cd engine/src | |
make clean | |
export CXXFLAGS="${CXXFLAGS} -I/usr/local/include -I/usr/local/include/libxml2" | |
export LDFLAGS="${LDFLAGS} -L/usr/local/lib -lxml2" | |
make CXX=g++-12 CC=gcc-12 install SBML_COMPAT=1 | |
make CXX=g++-12 CC=gcc-12 MAXNODES=128 install SBML_COMPAT=1 | |
- name: Test MaBoSS | |
run: bash scripts/run_tests.sh | |
maboss_llvm_macos: | |
name: MaBoSS (clang) | |
runs-on: macos-12 | |
env: | |
CC: clang | |
CXX: clang++ | |
INSTALL_PATH: /usr/local | |
BUILD_PATH: /tmp/ | |
LIBXML_LIBDIR: /usr/local/opt/libxml2/lib/libxml2.dylib | |
LIBXML_INCLUDEDIR: /usr/local/opt/libxml2/include/libxml2/ | |
MACOSX_DEPLOYMENT_TARGET: 12.0 | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Install dependencies | |
run : | | |
brew install flex bison cmake hdf5 libxml2 | |
pip install numpy | |
- name: Set cmake version variable | |
run: | | |
echo "CMAKE_VERSION=$(cmake --version | head -n 1)" >> $GITHUB_ENV | |
- name: Cache compiled libSBML | |
id: cache-libsbml-clang | |
uses: actions/cache@v4 | |
with: | |
path: /tmp/libsbml-5.20.4 | |
key: ${{ runner.os }}-${{ env.CMAKE_VERSION }}-libSBML-5.20.4-clang++-namespace | |
- name: Compiling libSBML | |
if: steps.cache-libsbml-clang.outputs.cache-hit != 'true' | |
run: bash scripts/build_libsbml.sh | |
- name: Install libSBML | |
run: | | |
sudo bash scripts/install_libsbml.sh | |
- name: Build MaBoSS | |
run: | | |
cd engine/src | |
make clean | |
make CXX=g++ install SBML_COMPAT=1 | |
make CXX=g++ MAXNODES=128 install SBML_COMPAT=1 | |
- name: Test MaBoSS | |
run: bash scripts/run_tests.sh | |
maboss_binary_macos: | |
name: MaBoSS MacOSX x86_64 binary | |
runs-on: macos-12 | |
needs: [maboss_macos, maboss_llvm_macos] | |
env: | |
CC: clang | |
CXX: clang++ | |
INSTALL_PATH: /usr/local | |
BUILD_PATH: /tmp/ | |
LIBXML_LIBDIR: /usr/local/opt/libxml2/lib/libxml2.dylib | |
LIBXML_INCLUDEDIR: /usr/local/opt/libxml2/include/libxml2/ | |
MACOSX_DEPLOYMENT_TARGET: 12.0 | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Install dependencies | |
run : | | |
brew install flex bison cmake libxml2 | |
- name: Set cmake version variable | |
run: | | |
echo "CMAKE_VERSION=$(cmake --version | head -n 1)" >> $GITHUB_ENV | |
- name: Cache compiled libSBML | |
id: cache-libsbml-clang | |
uses: actions/cache@v4 | |
with: | |
path: /tmp/libsbml-5.20.4 | |
key: ${{ runner.os }}-${{ env.CMAKE_VERSION }}-libSBML-5.20.4-clang++-namespace | |
- name: Compiling libSBML | |
if: steps.cache-libsbml-clang.outputs.cache-hit != 'true' | |
run: bash scripts/build_libsbml.sh | |
- name: Install libSBML | |
run: sudo bash scripts/install_libsbml.sh | |
- name: Build binary | |
run: | | |
rm -fr engine/pub/* | |
cd engine/src | |
make clean | |
make install_static CC=clang CXX=clang++ SBML_COMPAT=1 | |
make install_static CC=clang CXX=clang++ MAXNODES=128 SBML_COMPAT=1 | |
make install_static CC=clang CXX=clang++ MAXNODES=256 SBML_COMPAT=1 | |
make install_static CC=clang CXX=clang++ MAXNODES=512 SBML_COMPAT=1 | |
make install_static CC=clang CXX=clang++ MAXNODES=1024 SBML_COMPAT=1 | |
cd ../pub | |
zip MaBoSS-osx64.zip * | |
- name: Caching produced project binaries | |
uses: actions/cache@v4 | |
with: | |
path: | | |
${{ github.workspace }}/engine/pub/MaBoSS-osx64.zip | |
key: ${{ runner.os }}-macos-MaBoSS-${{ github.run_id }} | |
- uses: actions/upload-artifact@v4 | |
if: github.event_name != 'release' | |
with: | |
name: MaBoSS-osx64 | |
path: /Users/runner/work/MaBoSS/MaBoSS/engine/pub/MaBoSS-osx64.zip | |
- uses: actions/upload-release-asset@v1 | |
if: github.event_name == 'release' | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
with: | |
upload_url: ${{ github.event.release.upload_url }} | |
asset_name: MaBoSS-osx64.zip | |
asset_path: /Users/runner/work/MaBoSS/MaBoSS/engine/pub/MaBoSS-osx64.zip | |
asset_content_type: application/zip | |
maboss_binary_macos_m1: | |
name: MaBoSS MacOSX arm64 binary | |
needs: [maboss_macos, maboss_llvm_macos] | |
runs-on: macos-14 | |
env: | |
CC: clang | |
CXX: clang++ | |
INSTALL_PATH: /usr/local | |
BUILD_PATH: /tmp/ | |
LIBXML_LIBDIR: /opt/homebrew/opt/libxml2/lib/libxml2.dylib | |
LIBXML_INCLUDEDIR: /opt/homebrew/opt/libxml2/include/ | |
MACOSX_DEPLOYMENT_TARGET: 12.0 | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Install dependencies | |
run : | | |
brew install flex bison cmake libxml2 | |
- name: Set cmake version variable | |
run: | | |
echo "CMAKE_VERSION=$(cmake --version | head -n 1)" >> $GITHUB_ENV | |
- name: Cache compiled libSBML | |
id: cache-libsbml-clang | |
uses: actions/cache@v4 | |
with: | |
path: /tmp/libsbml-5.20.4 | |
key: ${{ runner.os }}-m1-${{ env.CMAKE_VERSION }}-libSBML-5.20.4-clang++-namespace | |
- name: Compiling libSBML | |
if: steps.cache-libsbml-clang.outputs.cache-hit != 'true' | |
run: bash scripts/build_libsbml.sh | |
- name: Install libSBML | |
run: sudo bash scripts/install_libsbml.sh | |
- name: Build binary | |
run: | | |
rm -fr engine/pub/* | |
cd engine/src | |
make clean | |
make install_static CC=clang CXX=clang++ SBML_COMPAT=1 | |
make install_static CC=clang CXX=clang++ MAXNODES=128 SBML_COMPAT=1 | |
make install_static CC=clang CXX=clang++ MAXNODES=256 SBML_COMPAT=1 | |
make install_static CC=clang CXX=clang++ MAXNODES=512 SBML_COMPAT=1 | |
make install_static CC=clang CXX=clang++ MAXNODES=1024 SBML_COMPAT=1 | |
cd ../pub | |
zip MaBoSS-osx-arm64.zip * | |
- name: Caching produced project binaries | |
uses: actions/cache@v4 | |
with: | |
path: | | |
${{ github.workspace }}/engine/pub/MaBoSS-osx-arm64.zip | |
key: ${{ runner.os }}-macosarm64-MaBoSS-${{ github.run_id }} | |
- uses: actions/upload-artifact@v4 | |
if: github.event_name != 'release' | |
with: | |
name: MaBoSS-osx-arm64 | |
path: /Users/runner/work/MaBoSS/MaBoSS/engine/pub/MaBoSS-osx-arm64.zip | |
- uses: actions/upload-release-asset@v1 | |
if: github.event_name == 'release' | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
with: | |
upload_url: ${{ github.event.release.upload_url }} | |
asset_name: MaBoSS-osx-arm64.zip | |
asset_path: /Users/runner/work/MaBoSS/MaBoSS/engine/pub/MaBoSS-osx-arm64.zip | |
asset_content_type: application/zip | |
maboss_binary_macos_universal: | |
name: MaBoSS MacOSX universal binary | |
needs: [maboss_binary_macos, maboss_binary_macos_m1] | |
runs-on: macos-12 | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Install dependencies | |
run : | | |
brew install unzip | |
- name: Caching produced project binaries | |
uses: actions/cache@v4 | |
with: | |
path: | | |
${{ github.workspace }}/engine/pub/MaBoSS-osx-arm64.zip | |
key: ${{ runner.os }}-macosarm64-MaBoSS-${{ github.run_id }} | |
- name: Caching produced project binaries | |
uses: actions/cache@v4 | |
with: | |
path: | | |
${{ github.workspace }}/engine/pub/MaBoSS-osx64.zip | |
key: ${{ runner.os }}-macos-MaBoSS-${{ github.run_id }} | |
- name: Create universal binaries | |
run : | | |
cd engine/pub | |
unzip MaBoSS-osx64.zip -d MaBoSS-osx64 | |
unzip MaBoSS-osx-arm64.zip -d MaBoSS-osx-arm64 | |
lipo -create -output MaBoSS MaBoSS-osx64/MaBoSS MaBoSS-osx-arm64/MaBoSS | |
lipo -create -output MaBoSS_128n MaBoSS-osx64/MaBoSS_128n MaBoSS-osx-arm64/MaBoSS_128n | |
lipo -create -output MaBoSS_256n MaBoSS-osx64/MaBoSS_256n MaBoSS-osx-arm64/MaBoSS_256n | |
lipo -create -output MaBoSS_512n MaBoSS-osx64/MaBoSS_512n MaBoSS-osx-arm64/MaBoSS_512n | |
lipo -create -output MaBoSS_1024n MaBoSS-osx64/MaBoSS_1024n MaBoSS-osx-arm64/MaBoSS_1024n | |
lipo -create -output PopMaBoSS MaBoSS-osx64/PopMaBoSS MaBoSS-osx-arm64/PopMaBoSS | |
lipo -create -output PopMaBoSS_128n MaBoSS-osx64/PopMaBoSS_128n MaBoSS-osx-arm64/PopMaBoSS_128n | |
lipo -create -output PopMaBoSS_256n MaBoSS-osx64/PopMaBoSS_256n MaBoSS-osx-arm64/PopMaBoSS_256n | |
lipo -create -output PopMaBoSS_512n MaBoSS-osx64/PopMaBoSS_512n MaBoSS-osx-arm64/PopMaBoSS_512n | |
lipo -create -output PopMaBoSS_1024n MaBoSS-osx64/PopMaBoSS_1024n MaBoSS-osx-arm64/PopMaBoSS_1024n | |
zip MaBoSS-osx-universal.zip MaBoSS MaBoSS_128n MaBoSS_256n MaBoSS_512n MaBoSS_1024n PopMaBoSS PopMaBoSS_128n PopMaBoSS_256n PopMaBoSS_512n PopMaBoSS_1024n | |
- uses: actions/upload-artifact@v4 | |
if: github.event_name != 'release' | |
with: | |
name: MaBoSS-osx-universal | |
path: /Users/runner/work/MaBoSS/MaBoSS/engine/pub/MaBoSS-osx-universal.zip | |
- uses: actions/upload-release-asset@v1 | |
if: github.event_name == 'release' | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
with: | |
upload_url: ${{ github.event.release.upload_url }} | |
asset_name: MaBoSS-osx-universal.zip | |
asset_path: /Users/runner/work/MaBoSS/MaBoSS/engine/pub/MaBoSS-osx-universal.zip | |
asset_content_type: application/zip | |
maboss_library_macos: | |
name: Building MaBoSS osx library | |
runs-on: macos-12 | |
needs: [maboss_macos, maboss_llvm_macos] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Install dependencies | |
run : | | |
brew install flex bison | |
- name: Build library | |
run: | | |
rm -fr engine/pub/* | |
cd engine/src | |
make clean | |
make install_lib CC=gcc-12 CXX=g++-12 | |
make install_lib MAXNODES=128 CC=gcc-12 CXX=g++-12 | |
make install_lib MAXNODES=256 CC=gcc-12 CXX=g++-12 | |
make install_lib MAXNODES=512 CC=gcc-12 CXX=g++-12 | |
make install_lib MAXNODES=1024 CC=gcc-12 CXX=g++-12 | |
make install_alib CC=gcc-12 CXX=g++-12 | |
make install_alib MAXNODES=128 CC=gcc-12 CXX=g++-12 | |
make install_alib MAXNODES=256 CC=gcc-12 CXX=g++-12 | |
make install_alib MAXNODES=512 CC=gcc-12 CXX=g++-12 | |
make install_alib MAXNODES=1024 CC=gcc-12 CXX=g++-12 | |
make clean | |
cd ../../../ | |
tar -zcvf libMaBoSS-osx64.tar.gz MaBoSS/README.md MaBoSS/LICENSE MaBoSS/engine/src MaBoSS/engine/include MaBoSS/engine/lib | |
- uses: actions/upload-artifact@v4 | |
if: github.event_name != 'release' | |
with: | |
name: libMaBoSS-osx64 | |
path: /Users/runner/work/MaBoSS/libMaBoSS-osx64.tar.gz | |
- uses: actions/upload-release-asset@v1 | |
if: github.event_name == 'release' | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
with: | |
upload_url: ${{ github.event.release.upload_url }} | |
asset_name: libMaBoSS-osx64.tar.gz | |
asset_path: /Users/runner/work/MaBoSS/libMaBoSS-osx64.tar.gz | |
asset_content_type: application/gzip | |
maboss_library_macos_m1: | |
name: Building MaBoSS osx library for arm64 | |
runs-on: macos-14 | |
needs: [maboss_macos, maboss_llvm_macos] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Install dependencies | |
run : | | |
brew install flex bison | |
- name: Build library | |
run: | | |
rm -fr engine/pub/* | |
cd engine/src | |
make clean | |
make install_lib CC=gcc-12 CXX=g++-12 | |
make install_lib MAXNODES=128 CC=gcc-12 CXX=g++-12 | |
make install_lib MAXNODES=256 CC=gcc-12 CXX=g++-12 | |
make install_lib MAXNODES=512 CC=gcc-12 CXX=g++-12 | |
make install_lib MAXNODES=1024 CC=gcc-12 CXX=g++-12 | |
make install_alib CC=gcc-12 CXX=g++-12 | |
make install_alib MAXNODES=128 CC=gcc-12 CXX=g++-12 | |
make install_alib MAXNODES=256 CC=gcc-12 CXX=g++-12 | |
make install_alib MAXNODES=512 CC=gcc-12 CXX=g++-12 | |
make install_alib MAXNODES=1024 CC=gcc-12 CXX=g++-12 | |
make clean | |
cd ../../../ | |
tar -zcvf libMaBoSS-macos-arm64.tar.gz MaBoSS/README.md MaBoSS/LICENSE MaBoSS/engine/src MaBoSS/engine/include MaBoSS/engine/lib | |
- uses: actions/upload-artifact@v4 | |
if: github.event_name != 'release' | |
with: | |
name: libMaBoSS-macos-arm64 | |
path: /Users/runner/work/MaBoSS/libMaBoSS-macos-arm64.tar.gz | |
- uses: actions/upload-release-asset@v1 | |
if: github.event_name == 'release' | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
with: | |
upload_url: ${{ github.event.release.upload_url }} | |
asset_name: libMaBoSS-macos-arm64.tar.gz | |
asset_path: /Users/runner/work/MaBoSS/libMaBoSS-macos-arm64.tar.gz | |
asset_content_type: application/gzip | |
maboss_library_sbml_macos: | |
name: Building MaBoSS osx library with libSBML | |
runs-on: macos-12 | |
needs: [maboss_macos, maboss_llvm_macos] | |
env: | |
CC: gcc-12 | |
CXX: g++-12 | |
INSTALL_PATH: /usr/local/ | |
BUILD_PATH: /tmp/ | |
LIBXML_LIBDIR: /usr/local/opt/libxml2/lib/libxml2.dylib | |
LIBXML_INCLUDEDIR: /usr/local/opt/libxml2/include/libxml2 | |
MACOSX_DEPLOYMENT_TARGET: 12.0 | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Install dependencies | |
run : | | |
brew install flex bison cmake libxml2 | |
- name: Set cmake version variable | |
run: | | |
echo "CMAKE_VERSION=$(cmake --version | head -n 1)" >> $GITHUB_ENV | |
- name: Cache compiled libSBML | |
id: cache-libsbml-gcc12 | |
uses: actions/cache@v4 | |
with: | |
path: /tmp/libsbml-5.20.4 | |
key: ${{ runner.os }}-${{ env.CMAKE_VERSION }}-libSBML-5.20.4-g++12-namespace | |
- name: Compiling libSBML | |
if: steps.cache-libsbml-gcc11.outputs.cache-hit != 'true' | |
run: bash scripts/build_libsbml.sh | |
- name: Install libSBML | |
run: sudo bash scripts/install_libsbml.sh | |
- name: Build library | |
run: | | |
export CXXFLAGS="${CXXFLAGS} -I/usr/local/include -I/usr/local/include/libxml2" | |
export LDFLAGS="${LDFLAGS} -L/usr/local/lib -lxml2" | |
rm -fr engine/pub/* | |
cd engine/src | |
make clean | |
make install CC=gcc-12 CXX=g++-12 | |
make install_lib SBML_COMPAT=1 CC=gcc-12 CXX=g++-12 | |
make install_lib SBML_COMPAT=1 CC=gcc-12 MAXNODES=128 CXX=g++-12 | |
make install_lib SBML_COMPAT=1 CC=gcc-12 MAXNODES=256 CXX=g++-12 | |
make install_lib SBML_COMPAT=1 CC=gcc-12 MAXNODES=512 CXX=g++-12 | |
make install_lib SBML_COMPAT=1 CC=gcc-12 MAXNODES=1024 CXX=g++-12 | |
make install_alib SBML_COMPAT=1 CC=gcc-12 CXX=g++-12 | |
make install_alib SBML_COMPAT=1 CC=gcc-12 MAXNODES=128 CXX=g++-12 | |
make install_alib SBML_COMPAT=1 CC=gcc-12 MAXNODES=256 CXX=g++-12 | |
make install_alib SBML_COMPAT=1 CC=gcc-12 MAXNODES=512 CXX=g++-12 | |
make install_alib SBML_COMPAT=1 CC=gcc-12 MAXNODES=1024 CXX=g++-12 | |
make clean | |
cd ../../../ | |
tar -zcvf libMaBoSS-sbml-osx64.tar.gz MaBoSS/README.md MaBoSS/LICENSE MaBoSS/engine/src MaBoSS/engine/include MaBoSS/engine/lib | |
- uses: actions/upload-artifact@v4 | |
if: github.event_name != 'release' | |
with: | |
name: libMaBoSS-sbml-osx64 | |
path: /Users/runner/work/MaBoSS/libMaBoSS-sbml-osx64.tar.gz | |
- uses: actions/upload-release-asset@v1 | |
if: github.event_name == 'release' | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
with: | |
upload_url: ${{ github.event.release.upload_url }} | |
asset_name: libMaBoSS-sbml-osx64.tar.gz | |
asset_path: /Users/runner/work/MaBoSS/libMaBoSS-sbml-osx64.tar.gz | |
asset_content_type: application/gzip | |
conda_maboss_macosx: | |
name: Build Conda MaBoSS package | |
needs: [maboss_macos, maboss_llvm_macos] | |
strategy: | |
fail-fast: false | |
matrix: | |
repo: [ | |
{id: 0, name: "defaults"}, | |
{id: 1, name: "conda-forge"} | |
] | |
runs-on: macos-12 | |
defaults: | |
run: | |
shell: sh -l {0} | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: conda-incubator/setup-miniconda@v3 | |
with: | |
auto-update-conda: true | |
channels: ${{ matrix.repo.name }} | |
python-version: 3.12 | |
use-mamba: true | |
- name: Installing conda-build | |
run: | | |
conda install conda-build conda-verify anaconda-client | |
- name: Installing MacOSX SDK | |
run: | | |
wget https://github.com/phracker/MacOSX-SDKs/releases/download/11.3/MacOSX10.13.sdk.tar.xz | |
sudo tar xf MacOSX10.13.sdk.tar.xz -C /opt | |
echo "conda_build:" > ~/.condarc | |
echo " config_file: ~/.conda/conda_build_config.yaml" >> ~/.condarc | |
echo "CONDA_BUILD_SYSROOT:" > ~/.conda/conda_build_config.yaml | |
echo " - /opt/MacOSX10.13.sdk # [osx]" >> ~/.conda/conda_build_config.yaml | |
- name: Build MaBoSS Anaconda package | |
run: | | |
CUSTOM_BUILD_NUMBER=${{ matrix.repo.id }} conda build -c ${{ matrix.repo.name }} -c colomoto conda/maboss | |
- name: Upload MaBoSS to Anaconda cloud on vincent-noel | |
run: | | |
anaconda -t ${{ secrets.ANACONDA_TOKEN }} upload -u vincent-noel /usr/local/miniconda/envs/test/conda-bld/osx-64/*.tar.bz2 --force; | |
- name: Upload MaBoSS to Anaconda cloud on colomoto | |
if: github.repository == 'sysbio-curie/MaBoSS' && github.event_name == 'release' | |
run: | | |
anaconda -t ${{ secrets.ANACONDA_TOKEN }} upload -u colomoto /usr/local/miniconda/envs/test/conda-bld/osx-64/*.tar.bz2 --force; | |
conda_maboss_macosx_m1: | |
name: Build Conda MaBoSS package for arm64 | |
needs: [maboss_macos, maboss_llvm_macos] | |
strategy: | |
fail-fast: false | |
matrix: | |
repo: [ | |
{id: 0, name: "defaults", path: "/Users/runner/miniconda3"}, | |
{id: 1, name: "conda-forge", path: "/Users/runner/miniconda3"} | |
] | |
runs-on: macos-14 | |
defaults: | |
run: | |
shell: sh -l {0} | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: conda-incubator/setup-miniconda@v3 | |
with: | |
auto-update-conda: true | |
channels: ${{ matrix.repo.name }} | |
python-version: 3.12 | |
use-mamba: true | |
- name: Installing conda-build | |
run: | | |
conda install conda-build conda-verify anaconda-client | |
- name: Installing MacOSX SDK | |
run: | | |
wget https://github.com/phracker/MacOSX-SDKs/releases/download/11.3/MacOSX11.0.sdk.tar.xz | |
sudo tar xf MacOSX11.0.sdk.tar.xz -C /opt | |
echo "conda_build:" > ~/.condarc | |
echo " config_file: ~/.conda/conda_build_config.yaml" >> ~/.condarc | |
echo "CONDA_BUILD_SYSROOT:" > ~/.conda/conda_build_config.yaml | |
echo " - /opt/MacOSX11.0.sdk # [osx]" >> ~/.conda/conda_build_config.yaml | |
- name: Build MaBoSS Anaconda package | |
run: | | |
CUSTOM_BUILD_NUMBER=${{ matrix.repo.id }} conda build -c ${{ matrix.repo.name }} -c colomoto conda/maboss | |
- name: Upload MaBoSS to Anaconda cloud on vincent-noel | |
run: | | |
anaconda -t ${{ secrets.ANACONDA_TOKEN }} upload -u vincent-noel ${{ matrix.repo.path }}/envs/test/conda-bld/osx-arm64/*.tar.bz2 --force; | |
- name: Upload MaBoSS to Anaconda cloud on colomoto | |
if: github.repository == 'sysbio-curie/MaBoSS' && github.event_name == 'release' | |
run: | | |
anaconda -t ${{ secrets.ANACONDA_TOKEN }} upload -u colomoto ${{ matrix.repo.path }}/envs/test/conda-bld/osx-arm64/*.tar.bz2 --force; | |