Major reorg on cmaboss #511
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Windows | |
| on: | |
| push: | |
| pull_request: | |
| release: | |
| types: [created] | |
| jobs: | |
| maboss_windows: | |
| name: MaBoSS Windows | |
| runs-on: windows-latest | |
| defaults: | |
| run: | |
| shell: msys2 {0} | |
| env: | |
| CC: gcc | |
| CXX: g++ | |
| INSTALL_PATH: /mingw64/ | |
| BUILD_PATH: /tmp/ | |
| LIBXML_LIBDIR: /mingw64/lib/libxml2.dll.a | |
| LIBXML_INCLUDEDIR: /mingw64/include/libxml2/ | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: msys2/setup-msys2@v2 | |
| with: | |
| update: true | |
| install: flex bison make | |
| mingw-w64-x86_64-toolchain mingw-w64-x86_64-cmake mingw-w64-x86_64-binutils | |
| mingw-w64-x86_64-gcc mingw-w64-x86_64-headers-git mingw-w64-x86_64-gcc-libs | |
| mingw-w64-x86_64-libwinpthread-git mingw-w64-x86_64-winpthreads-git mingw-w64-x86_64-bzip2 | |
| mingw-w64-x86_64-lapack mingw-w64-x86_64-openblas mingw-w64-x86_64-hdf5 | |
| mingw-w64-x86_64-python-pip mingw-w64-x86_64-python-numpy mingw-w64-x86_64-libxml2 | |
| mingw-w64-x86_64-diffutils | |
| - name: Cache compiled libSBML | |
| id: cache-libsbml-gcc | |
| uses: actions/cache@v4 | |
| with: | |
| path: D:/a/_temp/msys64/tmp/libsbml-5.20.4 | |
| key: ${{ runner.os }}-libSBML-5.20.4-namespace | |
| - name: Compiling libSBML | |
| if: steps.cache-libsbml-gcc.outputs.cache-hit != 'true' | |
| run: | | |
| bash scripts/build_libsbml.sh | |
| - name: Install libSBML | |
| run: | | |
| bash scripts/install_libsbml.sh | |
| - name: Build MaBoSS | |
| run: | | |
| cd engine/src | |
| make MAXNODES=128 SBML_COMPAT=1 maboss popmaboss | |
| make SBML_COMPAT=1 maboss popmaboss | |
| - name: Test MaBoSS | |
| run: bash scripts/run_tests.sh | |
| maboss_binary_windows: | |
| runs-on: windows-latest | |
| name: Building MaBoSS Windows 64bits binary | |
| needs: maboss_windows | |
| defaults: | |
| run: | |
| shell: msys2 {0} | |
| env: | |
| CC: gcc | |
| CXX: g++ | |
| INSTALL_PATH: /mingw64/ | |
| BUILD_PATH: /tmp/ | |
| LIBXML_LIBDIR: /mingw64/lib/libxml2.dll.a | |
| LIBXML_INCLUDEDIR: /mingw64/include/libxml2/ | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: msys2/setup-msys2@v2 | |
| with: | |
| update: true | |
| install: flex bison make zip | |
| mingw-w64-x86_64-toolchain mingw-w64-x86_64-cmake mingw-w64-x86_64-binutils | |
| mingw-w64-x86_64-gcc mingw-w64-x86_64-headers-git mingw-w64-x86_64-gcc-libs | |
| mingw-w64-x86_64-libwinpthread-git mingw-w64-x86_64-winpthreads-git mingw-w64-x86_64-bzip2 | |
| mingw-w64-x86_64-lapack mingw-w64-x86_64-openblas mingw-w64-x86_64-libxml2 | |
| - name: Cache compiled libSBML | |
| id: cache-libsbml-gcc | |
| uses: actions/cache@v4 | |
| with: | |
| path: D:/a/_temp/msys64/tmp/libsbml-5.20.4 | |
| key: ${{ runner.os }}-libSBML-5.20.4-namespace | |
| - name: Compiling libSBML | |
| if: steps.cache-libsbml-gcc.outputs.cache-hit != 'true' | |
| run: | | |
| bash scripts/build_libsbml.sh | |
| - name: Install libSBML | |
| run: | | |
| bash scripts/install_libsbml.sh | |
| - name: Build binary | |
| run: | | |
| rm -fr engine/pub/* | |
| cd engine/src | |
| make clean | |
| make install_static SBML_COMPAT=1 | |
| make install_static MAXNODES=128 SBML_COMPAT=1 | |
| make install_static MAXNODES=256 SBML_COMPAT=1 | |
| make install_static MAXNODES=512 SBML_COMPAT=1 | |
| make install_static MAXNODES=1024 SBML_COMPAT=1 | |
| cd ../pub | |
| zip MaBoSS-win64.zip * | |
| - uses: actions/upload-artifact@v4 | |
| if: github.event_name != 'release' | |
| with: | |
| name: MaBoSS-win64 | |
| path: D:\a\MaBoSS/MaBoSS/engine/pub/MaBoSS-win64.zip | |
| - uses: actions/upload-release-asset@v1 | |
| if: github.event_name == 'release' | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| upload_url: ${{ github.event.release.upload_url }} | |
| asset_name: MaBoSS-win64.zip | |
| asset_path: D:\a\MaBoSS/MaBoSS/engine/pub/MaBoSS-win64.zip | |
| asset_content_type: application/zip | |
| maboss_library_windows: | |
| runs-on: windows-latest | |
| name: Building MaBoSS Windows 64bits library | |
| needs: maboss_windows | |
| defaults: | |
| run: | |
| shell: msys2 {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: msys2/setup-msys2@v2 | |
| with: | |
| update: true | |
| install: flex bison make | |
| mingw-w64-x86_64-toolchain mingw-w64-x86_64-cmake mingw-w64-x86_64-binutils | |
| mingw-w64-x86_64-gcc mingw-w64-x86_64-headers-git mingw-w64-x86_64-gcc-libs | |
| mingw-w64-x86_64-libwinpthread-git mingw-w64-x86_64-winpthreads-git | |
| - name: Build library | |
| run: | | |
| rm -fr engine/pub/* | |
| cd engine/src | |
| make clean | |
| make install_lib | |
| make install_lib MAXNODES=128 | |
| make install_lib MAXNODES=256 | |
| make install_lib MAXNODES=512 | |
| make install_lib MAXNODES=1024 | |
| make install_alib | |
| make install_alib MAXNODES=128 | |
| make install_alib MAXNODES=256 | |
| make install_alib MAXNODES=512 | |
| make install_alib MAXNODES=1024 | |
| make clean | |
| cd ../../../ | |
| tar -zcvf libMaBoSS-win64.tar.gz MaBoSS/README.md MaBoSS/LICENSE MaBoSS/engine/src MaBoSS/engine/include MaBoSS/engine/lib | |
| - uses: actions/upload-artifact@v4 | |
| if: github.event_name != 'release' | |
| with: | |
| name: libMaBoSS-win64 | |
| path: D:\a\MaBoSS/libMaBoSS-win64.tar.gz | |
| - uses: actions/upload-release-asset@v1 | |
| if: github.event_name == 'release' | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| upload_url: ${{ github.event.release.upload_url }} | |
| asset_name: libMaBoSS-win64.tar.gz | |
| asset_path: D:\a\MaBoSS/libMaBoSS-win64.tar.gz | |
| asset_content_type: application/gzip | |
| maboss_sbml_library_windows: | |
| runs-on: windows-latest | |
| name: Building MaBoSS Windows 64bits library with libSBML | |
| needs: maboss_windows | |
| defaults: | |
| run: | |
| shell: msys2 {0} | |
| env: | |
| CC: gcc | |
| CXX: g++ | |
| INSTALL_PATH: /mingw64/ | |
| BUILD_PATH: /tmp/ | |
| LIBXML_LIBDIR: /mingw64/lib/libxml2.dll.a | |
| LIBXML_INCLUDEDIR: /mingw64/include/libxml2/ | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: msys2/setup-msys2@v2 | |
| with: | |
| update: true | |
| install: flex bison make | |
| mingw-w64-x86_64-toolchain mingw-w64-x86_64-cmake mingw-w64-x86_64-binutils | |
| mingw-w64-x86_64-gcc mingw-w64-x86_64-headers-git mingw-w64-x86_64-gcc-libs | |
| mingw-w64-x86_64-libwinpthread-git mingw-w64-x86_64-winpthreads-git mingw-w64-x86_64-bzip2 | |
| mingw-w64-x86_64-lapack mingw-w64-x86_64-openblas mingw-w64-x86_64-libxml2 | |
| - name: Cache compiled libSBML | |
| id: cache-libsbml-gcc | |
| uses: actions/cache@v4 | |
| with: | |
| path: D:/a/_temp/msys64/tmp/libsbml-5.20.4 | |
| key: ${{ runner.os }}-libSBML-5.20.4-namespace | |
| - name: Compiling libSBML | |
| if: steps.cache-libsbml-gcc.outputs.cache-hit != 'true' | |
| run: | | |
| bash scripts/build_libsbml.sh | |
| - name: Install libSBML | |
| run: | | |
| bash scripts/install_libsbml.sh | |
| - name: Build library | |
| run: | | |
| rm -fr engine/pub/* | |
| cd engine/src | |
| make clean | |
| make install_lib SBML_COMPAT=1 | |
| make install_lib MAXNODES=128 SBML_COMPAT=1 | |
| make install_lib MAXNODES=256 SBML_COMPAT=1 | |
| make install_lib MAXNODES=512 SBML_COMPAT=1 | |
| make install_lib MAXNODES=1024 SBML_COMPAT=1 | |
| make install_alib SBML_COMPAT=1 | |
| make install_alib MAXNODES=128 SBML_COMPAT=1 | |
| make install_alib MAXNODES=256 SBML_COMPAT=1 | |
| make install_alib MAXNODES=512 SBML_COMPAT=1 | |
| make install_alib MAXNODES=1024 SBML_COMPAT=1 | |
| make clean | |
| cd ../../../ | |
| tar -zcvf libMaBoSS-sbml-win64.tar.gz MaBoSS/README.md MaBoSS/LICENSE MaBoSS/engine/src MaBoSS/engine/include MaBoSS/engine/lib | |
| - uses: actions/upload-artifact@v4 | |
| if: github.event_name != 'release' | |
| with: | |
| name: libMaBoSS-sbml-win64 | |
| path: D:\a\MaBoSS/libMaBoSS-sbml-win64.tar.gz | |
| - uses: actions/upload-release-asset@v1 | |
| if: github.event_name == 'release' | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| upload_url: ${{ github.event.release.upload_url }} | |
| asset_name: libMaBoSS-sbml-win64.tar.gz | |
| asset_path: D:\a\MaBoSS/libMaBoSS-sbml-win64.tar.gz | |
| asset_content_type: application/gzip | |