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@talmolab

Talmo Lab at the Salk Institute

Talmo Pereira's research group at the Salk Institute for Biological Studies.

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  1. sleap sleap Public

    A deep learning framework for multi-animal pose tracking.

    Python 425 97

  2. sleap-io sleap-io Public

    Standalone utilities for SLEAP pose tracking data.

    Python 12 9

  3. sleap-anipose sleap-anipose Public

    SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.

    Python 17 1

  4. sleap-roots sleap-roots Public

    Analysis tools for SLEAP-based plant root phenotyping.

    Python 8

  5. dreem dreem Public

    DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.

    Python 7 1

Repositories

Showing 10 of 45 repositories
  • stac-mjx Public

    Implementation of STAC using MJX for GPU acceleration. Part of VNL project.

    talmolab/stac-mjx’s past year of commit activity
    HTML 4 BSD-3-Clause 2 27 1 Updated Sep 20, 2024
  • sleap-nn Public

    Neural network backend for training and inference for animal pose estimation.

    talmolab/sleap-nn’s past year of commit activity
    Python 4 GPL-3.0 0 8 6 Updated Sep 19, 2024
  • sleap Public

    A deep learning framework for multi-animal pose tracking.

    talmolab/sleap’s past year of commit activity
    Python 425 97 80 (4 issues need help) 24 Updated Sep 18, 2024
  • vnl-ray Public Forked from TuragaLab/flybody

    MuJoCo fruit fly body model and reinforcement learning tasks

    talmolab/vnl-ray’s past year of commit activity
    Python 2 Apache-2.0 8 0 0 Updated Sep 18, 2024
  • sleap-io Public

    Standalone utilities for SLEAP pose tracking data.

    talmolab/sleap-io’s past year of commit activity
    Python 12 BSD-3-Clause 9 11 4 Updated Sep 18, 2024
  • sleap-deps Public

    Packages necessary for sleap build maintained by the SLEAP team.

    talmolab/sleap-deps’s past year of commit activity
    Shell 0 Apache-2.0 0 0 0 Updated Sep 12, 2024
  • internal-dockerfiles Public

    dockerfiles for talmo

    talmolab/internal-dockerfiles’s past year of commit activity
    Dockerfile 0 1 0 2 Updated Sep 5, 2024
  • dreem Public

    DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.

    talmolab/dreem’s past year of commit activity
    Python 7 BSD-3-Clause 1 10 6 Updated Aug 30, 2024
  • sleap-roots Public

    Analysis tools for SLEAP-based plant root phenotyping.

    talmolab/sleap-roots’s past year of commit activity
    Python 8 BSD-3-Clause 0 4 0 Updated Aug 26, 2024
  • janky-charuco-calibrator Public

    Jankily calibrating charucoly

    talmolab/janky-charuco-calibrator’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Aug 24, 2024
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