Release Pipeline Fixes

[atharva-2001]

📝 Description

Type: 🪲 bugfix | 🚀 feature | ☣️ breaking change | 🚦 testing | 📝 documentation | 🎢 infrastructure

Fixes zenodo badge
https://github.com/atharva-2001/tardis/tree/fix_zenodo_readme?tab=readme-ov-file

Pre release codecov works
https://github.com/tardis-sn/tardis/actions/runs/10214070406/job/28261177349?pr=2767

The compare refdata pipeline will have to be fixed in the tardis-refdata repo.

📌 Resources

Examples, notebooks, and links to useful references.

🚦 Testing

How did you test these changes?

• Testing pipeline
• Other method (describe)
• My changes can't be tested (explain why)

☑️ Checklist

• I requested two reviewers for this pull request
• I updated the documentation according to my changes
• I built the documentation by applying the build_docs label

Note: If you are not allowed to perform any of these actions, ping (@) a contributor.

[tardis-bot]

*beep* *bop*
Hi human,
I ran ruff on the latest commit (9f2eed0).
Here are the outputs produced.
Results can also be downloaded as artifacts here.
Summarised output:

Complete output(might be large):

[andrewfullard]

1. do we know why the DOI changed? (looks like they redirect)
2. Zenodo's release(s) are missing all of 2024

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 69.42%. Comparing base (c82dde5) to head (9f2eed0).

Additional details and impacted files

@@            Coverage Diff             @@
##           master    #2767      +/-   ##
==========================================
- Coverage   69.98%   69.42%   -0.56%     
==========================================
  Files         196      196              
  Lines       15008    15008              
==========================================
- Hits        10503    10419      -84     
- Misses       4505     4589      +84     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

[tardis-bot]

*beep* *bop*

Hi, human.

The docs workflow has succeeded ✔️

Click here to see your results.

[atharva-2001]

1. do we know why the DOI changed? (looks like they redirect)

• The DOI changes with each release, this DOI is the permanent one I found from zenodo(https://zenodo.org/records/10207663)-

2. Zenodo's release(s) are missing all of 2024-
   There was a switch which was off- and the website said that the sync will turn on once I turn the switch on. This cannot be tested on this repo since until we don't have an official release, but I tested it on my fork using our release workflow and it published on zenodo.

[tardis-bot]

*beep* *bop*
Hi human,
I ran benchmarks as you asked comparing master (c82dde5) and the latest commit (9f2eed0).
Here are the logs produced by ASV.
Results can also be downloaded as artifacts here.

Significantly changed benchmarks:

All benchmarks:

All benchmarks:

| Change   | Before [c82dde5f] <master>   | After [9f2eed03]    | Ratio   | Benchmark (Parameter)                                                                                                                                                                                                                              |
|----------|------------------------------|---------------------|---------|----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
|          | 2.55±0.8μs                   | 2.81±0.9μs          | ~1.10   | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_compton_opacity_calculation(100000.0, 255.5)                                                                                                                                    |
|          | 2.78±0.9μs                   | 2.63±0.8μs          | 0.94    | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_compton_opacity_calculation(100000.0, 511.0)                                                                                                                                    |
|          | 3.33±1μs                     | 2.37±0.8μs          | ~0.71   | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_compton_opacity_calculation(100000.0, 5110000000.0)                                                                                                                             |
|          | 2.77±1μs                     | 2.74±0.9μs          | 0.99    | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_compton_opacity_calculation(100000000000.0, 255.5)                                                                                                                              |
|          | 2.98±1μs                     | 2.35±0.7μs          | ~0.79   | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_compton_opacity_calculation(100000000000.0, 511.0)                                                                                                                              |
|          | 4.30±2μs                     | 3.16±1μs            | ~0.73   | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_compton_opacity_calculation(100000000000.0, 5110000000.0)                                                                                                                       |
|          | 2.76±0.9μs                   | 2.83±1μs            | 1.03    | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_compton_opacity_calculation(1000000000000000.0, 255.5)                                                                                                                          |
|          | 2.60±0.9μs                   | 2.44±0.8μs          | 0.94    | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_compton_opacity_calculation(1000000000000000.0, 511.0)                                                                                                                          |
|          | 2.83±1μs                     | 2.45±0.8μs          | ~0.87   | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_compton_opacity_calculation(1000000000000000.0, 5110000000.0)                                                                                                                   |
|          | 4.75±2μs                     | 3.93±1μs            | ~0.83   | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_pair_creation_opacity_calculation({'Ejecta_density': 0.01, 'Energy': 255.5, 'Iron_group_fraction': 0.0})                                                                        |
|          | 5.07±2μs                     | 4.41±2μs            | ~0.87   | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_pair_creation_opacity_calculation({'Ejecta_density': 0.01, 'Energy': 255.5, 'Iron_group_fraction': 0.5})                                                                        |
|          | 4.98±2μs                     | 4.47±2μs            | ~0.90   | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_pair_creation_opacity_calculation({'Ejecta_density': 0.01, 'Energy': 511.0, 'Iron_group_fraction': 0.5})                                                                        |
|          | 4.95±2μs                     | 4.09±2μs            | ~0.83   | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_pair_creation_opacity_calculation({'Ejecta_density': 0.01, 'Energy': 5110000000.0, 'Iron_group_fraction': 0.0})                                                                 |
|          | 25.7±10μs                    | 4.42±2μs            | ~0.17   | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_pair_creation_opacity_calculation({'Ejecta_density': 100000.0, 'Energy': 255.5, 'Iron_group_fraction': 1.0})                                                                    |
|          | 6.28±3μs                     | 4.71±2μs            | ~0.75   | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_photoabsorption_opacity_calculation({'Ejecta_density': 0.01, 'Energy': 255.5, 'Iron_group_fraction': 0.0})                                                                      |
|          | 5.55±2μs                     | 4.87±2μs            | ~0.88   | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_photoabsorption_opacity_calculation({'Ejecta_density': 0.01, 'Energy': 255.5, 'Iron_group_fraction': 0.5})                                                                      |
|          | 5.28±2μs                     | 4.77±2μs            | ~0.90   | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_photoabsorption_opacity_calculation({'Ejecta_density': 0.01, 'Energy': 511.0, 'Iron_group_fraction': 0.5})                                                                      |
|          | 4.64±2μs                     | 4.61±2μs            | 0.99    | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_photoabsorption_opacity_calculation({'Ejecta_density': 0.01, 'Energy': 5110000000.0, 'Iron_group_fraction': 0.0})                                                               |
|          | 4.69±2μs                     | 4.72±2μs            | 1.01    | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_photoabsorption_opacity_calculation({'Ejecta_density': 100000.0, 'Energy': 255.5, 'Iron_group_fraction': 1.0})                                                                  |
|          | 1.49±0.01s                   | 1.52±0.01s          | 1.02    | opacities_opacity_state.BenchmarkOpacitiesOpacityState.time_opacity_state_initialize('macroatom')                                                                                                                                                  |
|          | 1.49±0.01s                   | 1.51±0.01s          | 1.01    | opacities_opacity_state.BenchmarkOpacitiesOpacityState.time_opacity_state_initialize('scatter')                                                                                                                                                    |
|          | 39.8±0.01s                   | 39.8±0.01s          | 1.00    | run_tardis.BenchmarkRunTardis.time_run_tardis                                                                                                                                                                                                      |
|          | 1.03±0m                      | 1.02±0m             | 0.99    | run_tardis.BenchmarkRunTardis.time_run_tardis_rpacket_tracking                                                                                                                                                                                     |
|          | 2.14±0m                      | 2.14±0m             | 1.00    | spectrum_formal_integral.BenchmarkTransportMontecarloFormalIntegral.time_FormalIntegrator_functions                                                                                                                                                |
|          | 2.94±0.9μs                   | 3.50±1μs            | ~1.19   | spectrum_formal_integral.BenchmarkTransportMontecarloFormalIntegral.time_intensity_black_body({'nu': 100000000000000.0, 'temperature': 10000.0})                                                                                                   |
|          | 65.9±20μs                    | 66.7±20μs           | 1.01    | transport_geometry_calculate_distances.BenchmarkTransportGeometryCalculateDistances.time_calculate_distance_boundary                                                                                                                               |
|          | 76.7±10μs                    | 69.3±10μs           | ~0.90   | transport_geometry_calculate_distances.BenchmarkTransportGeometryCalculateDistances.time_calculate_distance_line({'packet': {'nu_line': 0.1, 'is_last_line': True}, 'enable_full_relativity': True})                                               |
|          | 73.6±10μs                    | 71.2±10μs           | 0.97    | transport_geometry_calculate_distances.BenchmarkTransportGeometryCalculateDistances.time_calculate_distance_line({'packet': {'nu_line': 0.2, 'is_last_line': False}, 'enable_full_relativity': True})                                              |
|          | 83.8±20μs                    | 87.5±20μs           | 1.04    | transport_montecarlo_estimators_radfield_estimator_calcs.BenchmarkMontecarloMontecarloNumbaPacket.time_update_line_estimators({'cur_line_id': 0, 'distance_trace': 0, 'time_explosion': 52000000.0, 'enable_full_relativity': True})               |
|          | 100±30μs                     | 84.3±20μs           | ~0.84   | transport_montecarlo_estimators_radfield_estimator_calcs.BenchmarkMontecarloMontecarloNumbaPacket.time_update_line_estimators({'cur_line_id': 0, 'distance_trace': 1000000000000.0, 'time_explosion': 52000000.0, 'enable_full_relativity': True}) |
|          | 83.2±20μs                    | 86.9±20μs           | 1.05    | transport_montecarlo_estimators_radfield_estimator_calcs.BenchmarkMontecarloMontecarloNumbaPacket.time_update_line_estimators({'cur_line_id': 1, 'distance_trace': 100000.0, 'time_explosion': 10000000000.0, 'enable_full_relativity': False})    |
|          | 7.73±0.02s                   | 7.91±0.03s          | 1.02    | transport_montecarlo_interaction.BenchmarkTransportMontecarloInteraction.time_line_emission({'mu': 0.8599443103322428, 'emission_line_id': 1000, 'energy': 0.9114437898710559})                                                                    |
|          | 7.78±0.01s                   | 7.96±0.01s          | 1.02    | transport_montecarlo_interaction.BenchmarkTransportMontecarloInteraction.time_line_scatter(<LineInteractionType.MACROATOM: 2>)                                                                                                                     |
|          | 7.78±0.05s                   | 7.90±0.03s          | 1.01    | transport_montecarlo_interaction.BenchmarkTransportMontecarloInteraction.time_line_scatter(<LineInteractionType.SCATTER: 0>)                                                                                                                       |
|          | 3.63±0.01s                   | 3.59±0.03s          | 0.99    | transport_montecarlo_interaction.BenchmarkTransportMontecarloInteraction.time_thomson_scatter                                                                                                                                                      |
|          | 5.03±0.06s                   | 5.15±0.02s          | 1.02    | transport_montecarlo_main_loop.BenchmarkTransportMontecarloMontecarloMainLoop.time_montecarlo_main_loop                                                                                                                                            |
|          | 22.7±7μs                     | 32.9±10μs           | ~1.45   | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_last_interaction_tracker_list(10)                                                                                                            |
|          | 61.7±20μs                    | 34.5±9μs            | ~0.56   | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_last_interaction_tracker_list(100)                                                                                                           |
|          | 136±20μs                     | 140±20μs            | 1.03    | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_last_interaction_tracker_list(1000)                                                                                                          |
|          | 28.6±10μs                    | 29.9±10μs           | 1.04    | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_tracker_list(1, 1)                                                                                                                           |
|          | 27.4±10μs                    | 32.0±10μs           | ~1.16   | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_tracker_list(1, 10)                                                                                                                          |
|          | 30.4±10μs                    | 34.5±10μs           | ~1.13   | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_tracker_list(1, 50)                                                                                                                          |
|          | 37.7±10μs                    | 48.7±20μs           | ~1.29   | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_tracker_list(10, 1)                                                                                                                          |
|          | 38.9±10μs                    | 43.9±10μs           | ~1.13   | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_tracker_list(10, 10)                                                                                                                         |
|          | 35.3±9μs                     | 45.4±10μs           | ~1.28   | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_tracker_list(10, 50)                                                                                                                         |
|          | 68.4±10μs                    | 130±30μs            | ~1.90   | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_tracker_list(50, 1)                                                                                                                          |
|          | 70.7±10μs                    | 108±30μs            | ~1.53   | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_tracker_list(50, 10)                                                                                                                         |
|          | 79.9±10μs                    | 92.9±20μs           | ~1.16   | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_tracker_list(50, 50)                                                                                                                         |
|          | 1.48±0s                      | 1.48±0.02s          | 1.00    | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_rpacket_trackers_to_dataframe                                                                                                                                 |
|          | 6.53±0.04s                   | 6.42±0.01s          | 0.98    | transport_montecarlo_single_packet_loop.BenchmarkTransportMontecarloSinglePacketLoop.time_single_packet_loop                                                                                                                                       |
|          | 4.98±0.02s                   | 5.01±0.02s          | 1.01    | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_bad_vpacket                                                                                                                                                      |
|          | 5.04±0.01s                   | 5.06±0.01s          | 1.00    | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_vpacket                                                                                                                                                          |
|          | 4.95±0.02s                   | 4.93±0.01s          | 1.00    | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_vpacket_volley({'tau_russian': 10.0, 'survival_possibility': 0.0})                                                                                               |
|          | 5.03±0.03s                   | 4.99±0.01s          | 0.99    | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_vpacket_volley({'tau_russian': 15.0, 'survival_possibility': 0.1})                                                                                               |
|          | 3.58±0s                      | 3.61±0s             | 1.01    | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_vpacket_within_shell                                                                                                                                             |

If you want to see the graph of the results, you can check it here