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1. fair_genome_indexer fair_genome_indexer Public

   Download and index Ensembl sequences and annotations, remove non-canonical chromosimes, remove low TSL, index with multiple tools

   Python

2. fair_bowtie2_mapping fair_bowtie2_mapping Public

   Align reads over a reference genome, filter aligned-reads, and mark duplicates

   Python

3. fair_gatk_mutect2 fair_gatk_mutect2 Public

   Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2

   Python 1 1

4. fair_macs2_calling fair_macs2_calling Public

   Snakemake workflow used to call peaks with Macs2

   Python

5. fair_fastqc_multiqc fair_fastqc_multiqc Public

   Perform basic QC over sequenced data

   Python

6. fair_rnaseq_salmon_quant fair_rnaseq_salmon_quant Public

   Snakemake workflow designed to perform RNASeq transcrpotime expression estimation with Salmon

   Python