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fix: Mapping for scores code optimization #745 #983

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merged 1 commit into from
Jan 2, 2025
Merged

fix: Mapping for scores code optimization #745 #983

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85 changes: 37 additions & 48 deletions ...main/java/org/techbd/service/converters/shinny/ScreeningResponseObservationConverter.java
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Original file line number Diff line number Diff line change
Expand Up @@ -48,6 +48,7 @@ public class ScreeningResponseObservationConverter extends BaseConverter {
"95617-7",
"95616-9",
"95615-1");

private static final Set<String> PHYSICAL_ACTIVITY_REFS = Set.of(
"89555-7",
"68516-4");
Expand All @@ -56,6 +57,11 @@ public class ScreeningResponseObservationConverter extends BaseConverter {
"44250-9",
"44255-8");

private static final Map<String, Set<String>> QUESTION_CODE_REF_MAP = Map.of(
"95614-4", INTERPERSONAL_SAFETY_REFS,
"77594-0", PHYSICAL_ACTIVITY_REFS,
"71969-0", MENTAL_STATE_REFS);

@Override
public ResourceType getResourceType() {
return ResourceType.Observation;
Expand All @@ -74,6 +80,7 @@ public List<BundleEntryComponent> convert(
LOG.info("ScreeningResponseObservationConverter::convert BEGIN for interaction id: {}", interactionId);
Map<String, String> questionAndAnswerCode = new HashMap<>();
List<BundleEntryComponent> bundleEntryComponents = new ArrayList<>();
Map<String, List<Reference>> derivedFromMap = new HashMap<>();

for (ScreeningObservationData data : screeningObservationDataList) {
Observation observation = new Observation();
Expand Down Expand Up @@ -144,7 +151,36 @@ public List<BundleEntryComponent> convert(
}
observation.setIssued(DateUtil.convertStringToDate(data.getRecordedTime()));
questionAndAnswerCode.put(data.getQuestionCode(), data.getAnswerCode());
addScoreRefs(observation, data, screeningObservationDataList);

QUESTION_CODE_REF_MAP.forEach((key, value) -> {
if (key.equals(data.getQuestionCode())) {
List<Reference> derivedFromRefs = screeningObservationDataList.stream()
.filter(obs -> value.contains(obs.getQuestionCode()))
.map(obs -> {
String derivedFromId = CsvConversionUtil.sha256(
obs.getQuestionCodeDisplay()
.replace(" ", "") +
obs.getQuestionCode()
+ obs.getEncounterId());

return new Reference("Observation/" + derivedFromId);
})
.collect(Collectors.toList());
derivedFromMap.put(observationId, derivedFromRefs);
}

});

List<Reference> derivedRefs = derivedFromMap.get(observationId);

if (derivedRefs != null && !derivedRefs.isEmpty()) {
observation.setDerivedFrom(derivedRefs);
if (LOG.isDebugEnabled()) {
derivedRefs.forEach(
ref -> LOG.debug("Added reference {} for the observation {}",
ref.getReference(), observationId));
}
}

BundleEntryComponent entry = new BundleEntryComponent();
entry.setFullUrl(fullUrl);
Expand Down Expand Up @@ -318,51 +354,4 @@ private CodeableConcept createCategory(String system, String code, String displa
return category;
}

private void addScoreRefs(Observation observation, ScreeningObservationData currentData,
List<ScreeningObservationData> allObservations) {

// Check for interpersonal safety, physical activity, or mental state codes
if (!"95614-4".equals(currentData.getQuestionCode()) &&
!"77594-0".equals(currentData.getQuestionCode()) &&
!"71969-0".equals(currentData.getQuestionCode())) {
return;
}

LOG.info("Processing observation with code: {}", currentData.getQuestionCode());

Set<String> relevantRefs;
String observationType;

// Determine which reference set to use based on question code
if ("95614-4".equals(currentData.getQuestionCode())) {
relevantRefs = INTERPERSONAL_SAFETY_REFS;
observationType = "InterpersonalSafety";
} else if ("77594-0".equals(currentData.getQuestionCode())) {
relevantRefs = PHYSICAL_ACTIVITY_REFS;
observationType = "PhysicalActivity";
} else {
relevantRefs = MENTAL_STATE_REFS;
observationType = "MentalState";
}
List<Reference> derivedFromRefs = allObservations.stream()
.filter(obs -> relevantRefs.contains(obs.getQuestionCode()))
.map(obs -> {
String observationId = CsvConversionUtil.sha256(
obs.getQuestionCodeDisplay().replace(" ", "") +
obs.getQuestionCode() + obs.getEncounterId());
return new Reference("Observation/" + observationId);
})
.collect(Collectors.toList());

if (!derivedFromRefs.isEmpty()) {
observation.setDerivedFrom(derivedFromRefs);
LOG.info("Added {} derived references for question code {}",
derivedFromRefs.size(), currentData.getQuestionCode());

if (LOG.isDebugEnabled()) {
derivedFromRefs.forEach(ref -> LOG.debug("Added reference: {}", ref.getReference()));
}
}
}

}
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