Skip to content
@theiagen

Theiagen Genomics

Pinned Loading

  1. public_health_bioinformatics public_health_bioinformatics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.

    WDL 37 17

  2. public_health_viral_genomics public_health_viral_genomics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, especially SARS-CoV-2

    WDL 39 17

  3. public_health_bacterial_genomics public_health_bacterial_genomics Public

    WDL 26 14

Repositories

Showing 10 of 31 repositories
  • public_health_bioinformatics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.

    theiagen/public_health_bioinformatics’s past year of commit activity
    WDL 37 GPL-3.0 17 86 5 Updated Sep 11, 2024
  • AlleleCalling-wdl Public
    theiagen/AlleleCalling-wdl’s past year of commit activity
    WDL 0 0 0 0 Updated Sep 11, 2024
  • theiagen_docker_builds Public
    theiagen/theiagen_docker_builds’s past year of commit activity
    Dockerfile 1 0 1 1 Updated Aug 27, 2024
  • mercury Public

    Mercury prepares and formats metadata for submission to national & international genomic databases.

    theiagen/mercury’s past year of commit activity
    Python 3 GPL-3.0 0 0 0 Updated Aug 26, 2024
  • stylo-wdl Public
    theiagen/stylo-wdl’s past year of commit activity
    WDL 1 0 0 0 Updated Aug 21, 2024
  • tbp-parser Public

    A TBProfiler output parser. Please contact support@theiagen.com or sage.wright@theiagen.com with any questions.

    theiagen/tbp-parser’s past year of commit activity
    Python 4 GPL-3.0 0 0 0 Updated Aug 20, 2024
  • NE-PGCOE-Support Public

    Theiagen support for NorthEast Pathogen Genomic Center of Excellence efforts

    theiagen/NE-PGCOE-Support’s past year of commit activity
    0 0 0 0 Updated Aug 6, 2024
  • public_health_viral_genomics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, especially SARS-CoV-2

    theiagen/public_health_viral_genomics’s past year of commit activity
    WDL 39 AGPL-3.0 17 15 1 Updated Aug 5, 2024
  • Western-WFD-2024 Public

    Resource for the Western Region WFD 2024 Training Event

    theiagen/Western-WFD-2024’s past year of commit activity
    Shell 0 GPL-3.0 3 0 12 Updated Jul 31, 2024
  • HMAS-wdl Public

    A WDL wrapper around HMAS-QC-Pipeline2 for Terra.bio

    theiagen/HMAS-wdl’s past year of commit activity
    WDL 0 0 0 1 Updated Jul 26, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…