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@theislab

Theis Lab

Institute of Computational Biology

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  1. single-cell-tutorial single-cell-tutorial Public

    Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

    Jupyter Notebook 1.4k 466

  2. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 804 192

  3. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 420 104

  4. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 344 52

  5. cellrank cellrank Public

    CellRank: dynamics from multi-view single-cell data

    Python 354 47

  6. scib scib Public

    Benchmarking analysis of data integration tools

    Python 320 63

Repositories

Showing 10 of 214 repositories
  • archmap Public
    theislab/archmap’s past year of commit activity
    JavaScript 4 MIT 0 3 0 Updated Dec 23, 2024
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard’s past year of commit activity
    HTML 3 0 0 0 Updated Dec 23, 2024
  • prophet Public
    theislab/prophet’s past year of commit activity
    Python 27 MIT 2 2 0 Updated Dec 22, 2024
  • single-cell-transformer-papers Public
    theislab/single-cell-transformer-papers’s past year of commit activity
    HTML 285 35 39 0 Updated Dec 21, 2024
  • graphcompass Public

    GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems

    theislab/graphcompass’s past year of commit activity
    Jupyter Notebook 34 MIT 0 1 0 Updated Dec 21, 2024
  • moscot-framework_reproducibility Public

    Data analysis for the moscot-framework project

    theislab/moscot-framework_reproducibility’s past year of commit activity
    Jupyter Notebook 3 0 2 0 Updated Dec 20, 2024
  • scib Public

    Benchmarking analysis of data integration tools

    theislab/scib’s past year of commit activity
    Python 320 MIT 63 34 6 Updated Dec 20, 2024
  • ehrapy Public

    Electronic Health Record Analysis with Python.

    theislab/ehrapy’s past year of commit activity
    Python 244 Apache-2.0 20 41 3 Updated Dec 20, 2024
  • multigrate Public

    Multigrate: multiomic data integration for single-cell genomics

    theislab/multigrate’s past year of commit activity
    Python 16 BSD-3-Clause 6 5 2 Updated Dec 19, 2024
  • troutpy Public

    Package for the analysis of Transcripts outside segmented cells in ST data

    theislab/troutpy’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 1 Updated Dec 19, 2024
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