updated docker images for pATLASflow

tiagofilipe12 · Jun 19, 2018 · 2628222 · 2628222
1 parent 8cc7dee
commit 2628222
Show file tree

Hide file tree

Showing 3 changed files with 5 additions and 5 deletions.
diff --git a/docker-images/mapping/Dockerfile b/docker-images/mapping/Dockerfile
@@ -40,10 +40,10 @@ ENV PATH="/ngstools/bin/samtools-1.7:$PATH"
 
 WORKDIR /ngstools/data/
 
-RUN wget https://github.com/tiagofilipe12/PlasmidCoverage/releases/download/1.1.2/indexes.tar.gz
+RUN wget https://github.com/tiagofilipe12/pATLASflow/releases/tag/1.4.1/indexes.tar.gz
 
 RUN tar xvzf indexes.tar.gz
 
 # Fetches json with lenghts used to generate -k parameter for bowtie as well as
 # plasmid lenghts
-RUN wget https://github.com/tiagofilipe12/PlasmidCoverage/releases/download/1.1.2/reads_sample_result_length.json
+RUN wget https://github.com/tiagofilipe12/pATLASflow/releases/tag/1.4.1/reads_sample_result_length.json
diff --git a/docker-images/mash_screen/Dockerfile b/docker-images/mash_screen/Dockerfile
@@ -20,4 +20,4 @@ WORKDIR /ngstools/data/
 
 # download index file generated by mash_wrapper.py and distributed with
 # its release
-RUN wget https://github.com/tiagofilipe12/mash_wrapper/releases/download/1.1.0/patlas_mash_sketch.msh
+RUN wget https://github.com/tiagofilipe12/pATLASflow/releases/tag/1.4.1/v1_4_1_11_06_2018_reference.msh
diff --git a/main.nf b/main.nf
@@ -38,7 +38,7 @@ if (params.mash_screen || params.mapping) {
 if (params.mash_screen || params.assembly) {
     // creates two channels for each approach
     Channel
-        .value("/ngstools/data/patlas_mash_sketch.msh")
+        .value("/ngstools/data/v1_4_1_11_06_2018_reference.msh")
         .into { refSketchChannel; refSketchChannel2 }
 }
 else {
@@ -69,7 +69,7 @@ if (params.mapping) {
     bowtieStuffChannel = Channel
         .value("/ngstools/data/indexes/patlas_bowtie_index")
     samtoolsStuffChannel = Channel
-        .value("/ngstools/data/indexes/master_fasta_patlas_version_18042018.fas.fai")
+        .value("/ngstools/data/indexes/master_fasta_v1_4_1_11_06_2018.fas.fai")
     lengthJsonChannel = Channel
         .value("/ngstools/data/reads_sample_result_length.json")
 }