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BioToolBox-v1.63

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@tjparnell tjparnell released this 24 Oct 03:51
· 391 commits to master since this release
  • Added minimal Cram file support through the HTS adapter.
    Currently only supports the reference fasta listed in the Cram
    file header.
  • Added fast paired-end option and paired-end start point options
    to script bam2wig. Temporary files now written to a temporary
    subdirectory, which can be specified. Extreme depth can now be
    handled properly by using 32 bit integers instead of 16. Splice
    segments can now be fractionally counted.
  • Brought back and updated old script correlate_position_data to
    identify positional shifts in nucleosome or ChIP signal peaks.
  • Added new SeqFeature methods to duplicate objects and delete
    subfeatures.
  • Added option to format result numbers in script get_datasets.
  • Fix numerous small bugs in scripts data2gff, data2fasta,
    get_intersecting_features, get_relative_data, and more