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Revise genomic sorting by introducing a sane, logical chromosome
ordering that smartly handles numerical, Roman, contigs, and
alternate names. Sorting is done by both start and end coordinates.
Sorting speed modestly improved.
Improve handling of coordinates of Data Feature objects, including
caching and setting.
Add support for narrowPeak summit coordinate as reference point
in multiple scripts.
Improve handling of databases, including bigWigSet feature types.
Make simplification of dataset names a little less aggressive.
Include options for excluding chromosomes and/or intervals when
generating a new list of genomic bins
Improve tasting of file formats, keeping the file format of parsed files
in the Data object.
Allow non-stranded values when parsing UCSC files, including bed files.