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I had a look in the parser: violations-lib/src/main/java/se/bjurr/violations/lib/parsers/Flake8Parser.java
I think it's not due to the ./ but the column part, the pattern matching accept only 1 decimal: "([^:]*):(\\d+)?:?(\\d)?:? \\[?(\\D+)(\\d*)\\]? (.*)"
and it should be with a +, like this: "([^:]*):(\\d+)?:?(\\d+)?:? \\[?(\\D+)(\\d*)\\]? (.*)"
See jenkinsci/analysis-model@881b1cf
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