amplicon

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Assembly and intrahost/low-frequency variant calling for viral samples

workflow nanopore virus pipeline nextflow assembly metagenomics variant-calling illumina oxford-nanopore amplicon viral ont nf-core long-read-sequencing artic covid-19 covid19 sars-cov-2

Reference-based consensus creation

bioinformatics nextflow amplicon sars-cov-2 monkeypox

Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.

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