#

batch-effect

Here are 3 public repositories matching this topic...

epigen / spilterlize_integrate

A Snakemake workflow to split, filter, normalize, integrate and select highly variable features of count matrices resulting from experiments with sequencing readout (e.g., RNA-seq, ATAC-seq, ChIP-seq, Methyl-seq, miRNA-seq,...) including diagnostic visualizations.

visualization workflow bioinformatics rna-seq snakemake integration pipeline ngs dimensionality-reduction chip-seq atac-seq normalization biomedical-data-science batch-effect count-matrix

Updated Sep 12, 2024
Python

HelloWorldLTY / AWGAN

Codes for paper: AWGAN: A Powerful Batch Effect Removal Model for scRNA-seq Data

deep-learning single-cell-genomics batch-effect

Updated Feb 9, 2023
Jupyter Notebook

eleozzr / desc-nopage

Deep Embedding for Single-cell Clustering. This repo has no files related to github page so that users can download it quickly.

clustering scrna-seq desc batch-effect

Updated Jul 30, 2020
Jupyter Notebook

Improve this page

Add a description, image, and links to the batch-effect topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the batch-effect topic, visit your repo's landing page and select "manage topics."