Core BioPerl 1.x code

🌳 Create a tree using Mash distances

reimplementation of BioPerl classes in Raku (e.g. the language formerly known as Perl6)

Collection of scripts for bacterial genomics

Tools for querying and analysis of genomic data

MFannot is a program for the annotation of mitochondrial and plastid genomes

LAVA (LAMP Assay Versatile Analysis) is an extendable open-source Loop-mediated isothermal AMPlification (LAMP)

Olfactory Receptor family Assigner (bioperl module)

Miscellaneous bioinformatics scripts written by me for myself and other people

A Snakemake workflow for microbial pangenomics analyses.

This repository contains the code used for screening putative extracellular Contractile Injection System (eCIS) loci from genomic sequences.

Sequencing of unculturable plant pathogens

Personal Perl modules

Simulates the evolution of intein invaded extein sequences based on simulated phylogenies and using a Monte-Carlo like process.

Bevezetés a bioionformatikába

Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)

Bioperl 1.7.7 containers based on alpine linux