ibn-salem / sevenC Star 12 Code Issues Pull requests 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs transcription-factors prediction hi-c chip-seq r-package sequence-motif 3d-genome chromatin-interaction Updated Dec 16, 2018 R
Linhua-Sun / Ath_Heat_Hi-C Star 6 Code Issues Pull requests Bioinformatic analysis of RNA-Seq, WGBS, and Hi-C in Arabidopsis python r transposons bioinformatics-analysis chromatin-interaction Updated Jan 6, 2020 R
Pasquali-lab / UMI4Cats Star 5 Code Issues Pull requests An R package for analyzing UMI-4C chromatin contact data. genomics chromatin chromatin-interaction umi4c Updated Oct 31, 2024 R
sirusb / R3CPET Star 4 Code Issues Pull requests 3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process dirichlet-process-mixtures chia-pet chromatin-interaction transcription-facto Updated Oct 6, 2020 R
tanlabcode / rGMAP Star 0 Code Issues Pull requests 3d-genome chromatin-interaction Updated Sep 21, 2018 R