📊 Codon usage tables in code-friendly format + Python bindings
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May 5, 2022 - Python
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codon-usage
Here are 15 public repositories matching this topic...
A python project for analysis of codon usage for gene or genome analysis
bioinformatics genome enc genome-analysis bioinformatics-analysis cai tai cbi bioinformatics-tool codon-usage codon codon-bias rscu codonw
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Nov 10, 2024 - Python
🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies
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Jan 23, 2023 - Python
Python package of codon usage bias analysis tools
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Dec 20, 2024 - Python
My Python3 package to compute common codon usage statistics given a FASTA of DNA sequences
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Dec 24, 2024 - Python
codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome.
horizontal-gene-transfer phage gene-clusters codon-usage biosynthetic-gene-clusters mobile-genetic-elements
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Jul 31, 2024 - Python
Simple Python program to perform codon optimization or heterology calculations.
protein-sequences dna-sequences codons codon-optimization codon-usage codon-bias codon-frequencies codon-optimizer
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Apr 13, 2021 - Python
Codonopt program is designed for codon optimization of protein sequences. The core of it based on the mathematical codon optimization proposed by Şen et al. (2020)
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Apr 8, 2021 - Python
Comparative analysis pipeline of Population's Codon Usage
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Jun 14, 2023 - Python
Currently, we don't have the bandwidth to update and maintain the Python version; please use the R version instead. (https://github.com/mt1022/cubar)
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Oct 4, 2023 - Python
A tool with nice GUI to visualize the codon usage frequencies in whole genomes
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Feb 2, 2021 - Python
A tool for dynamically calculating the codon usage bias in bacterial genomes and querying of a database for Codon Bias statistical analysis
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Aug 17, 2020 - Python
Calculating AA frequencies from codon design, and vice versa
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Oct 18, 2021 - Python
It is simple codon optimiser by using codon bias and usage
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Mar 26, 2023 - Python
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