📊 Codon usage tables in code-friendly format + Python bindings
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May 5, 2022 - Python
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codon-usage
Here are 36 public repositories matching this topic...
A Go package for designing DNA.
go bioinformatics synthetic-biology computational-biology sam genbank fasta fastq molecular-biology synbio rna-folding goldengate dna-barcode plasmids codon-optimization codon-usage pileup genetic-engineering dna-folding
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Dec 14, 2024 - Go
A python project for analysis of codon usage for gene or genome analysis
bioinformatics genome enc genome-analysis bioinformatics-analysis cai tai cbi bioinformatics-tool codon-usage codon codon-bias rscu codonw
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Nov 10, 2024 - Python
🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies
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Jan 23, 2023 - Python
Python package of codon usage bias analysis tools
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Dec 20, 2024 - Python
My Python3 package to compute common codon usage statistics given a FASTA of DNA sequences
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Dec 24, 2024 - Python
codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome.
horizontal-gene-transfer phage gene-clusters codon-usage biosynthetic-gene-clusters mobile-genetic-elements
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Jul 31, 2024 - Python
Simple Python program to perform codon optimization or heterology calculations.
protein-sequences dna-sequences codons codon-optimization codon-usage codon-bias codon-frequencies codon-optimizer
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Apr 13, 2021 - Python
Codonopt program is designed for codon optimization of protein sequences. The core of it based on the mathematical codon optimization proposed by Şen et al. (2020)
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Apr 8, 2021 - Python
A slimmed down fork of CodonW with python bindings
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May 4, 2023 - C
R Package for Codon Usage Bias Analysis
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Dec 9, 2024 - R
MATLAB package for codon usage bias and NGS analysis
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Feb 18, 2023 - MATLAB
Comparative analysis pipeline of Population's Codon Usage
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Jun 14, 2023 - Python
Currently, we don't have the bandwidth to update and maintain the Python version; please use the R version instead. (https://github.com/mt1022/cubar)
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Oct 4, 2023 - Python
A tool with nice GUI to visualize the codon usage frequencies in whole genomes
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Feb 2, 2021 - Python
A tool to translate a given protein sequence into a DNA sequence based on a constructed codon use table for a target heterologous host, Nicotiana benthamiana.
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Aug 12, 2022 - R
Source code to accompany manuscript entitled "Gaussian-distributed codon frequencies of genomes" (Khomtchouk & Nonner, 2019)
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Feb 3, 2019 - D
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