SPHARM-Net: Spherical Harmonics-based Convolutional Neural Network

Computational Anatomy Toolbox for SPM12 or SPM25

Fast regression and mediation analysis of vertex or voxel MRI data with TFCE

Rapid, topologically-correct cortical surface reconstruction

Code for predicting retinotopy from anatomy using geometric deep learning. See paper for more --> https://www.sciencedirect.com/science/article/pii/S1053811921008971

Threshold-free cluster enhancement toolbox for Matlab

SphericalLabeling: Cortical Surface Labeling using Spherical Data Augmentation and Context-aware Training

Deformable shape module with focus on neonatal cortex reconstruction.

Sphere2dice converts Cortical Brain Morphometry data from FreeSurfer or Gifty type into a stack of 2D images and saves is as numpy array. This stack of images is easier to use as input to conventional CNNs, while avoiding projection issues other methods suffer from.

Estimate cortical thickness out from two cortical meshes without node correspondence