This repository contains all scripts used to perform reference-guided genomic assembly from paired end sequence reads and screen for contaminants as was done in Clark et al. 2021. These scripts are designed to assemble the genomes for two strains of Daphnia pulicaria using Daphnia pulex (PA42) as a reference. This repository presents a simplifie…
Estimate age of single-nucleotide polymorphisms from genomes
Quantify structural variants in clonal Daphnia genomes
Effects of methyl farnesoate on male production in Daphnia pulex clones
Evolutionary genomics of shared mutations within the Daphnia pulex species complex.
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