R package for microbiome biomarker discovery
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Nov 4, 2023 - R
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differential-abundance-analysis
Here are 15 public repositories matching this topic...
MaAsLin2: Microbiome Multivariate Association with Linear Models
tools public metagenomics bioconductor repeated-measures microbiome false-discovery-rate biobakery differential-abundance-analysis multiple-covariates
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Nov 11, 2024 - R
Differential abundance (DA) and correlation analyses for microbial absolute abundance data
correlation sequencing microbiome normalization secom differential-abundance-analysis ancom ancombc ancombc2
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Oct 21, 2024 - R
Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check our ANCOMBC R package for the most up-to-date ANCOM-BC function.
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Oct 19, 2020 - HTML
Differential analysis of multi-omics data based on the Tweedie distribution
metagenomics microbiome single-cell differential-expression multi-omics-data differential-abundance-analysis
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Aug 8, 2024 - R
A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.
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Oct 30, 2023 - HTML
Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and differential abundance analysis"
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Aug 23, 2020 - HTML
Large-scale Benchmarking of Microbial Multivariable Association Methods
benchmarking metagenomics repeated-measures microbiome false-discovery-rate differential-abundance-methods synthetic-dataset-generation biobakery differential-abundance-analysis multiple-covariates
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Feb 2, 2021 - R
Collection of walkthrough tutorials on how to use Tweedieverse for differential analysis of omics data.
metagenomics scrna-seq microbiome differential-expression differential-analysis multi-omics differential-abundance-analysis
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Feb 26, 2022 - HTML
A Bayesian model for the differential abundance analysis of microbiome sequencing data
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May 31, 2024 - R
Large-scale Benchmarking of Microbial Multivariable Association Methods
benchmarking public metagenomics repeated-measures microbiome benchmark-framework false-discovery-rate differential-abundance-analysis multiple-covariates
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Nov 14, 2020 - R
🦠Research project in Bioinformatics Institute 2023-2024
snakemake dna beta-diversity iontorrent hiv samtools bowtie2 relative-abundances alpha-diversity kraken2 differential-abundance-analysis maaslin2
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Aug 16, 2024 - Jupyter Notebook
MAPping METastases in Neuroblastoma - spatially and temporally
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Oct 8, 2024 - R
dar: runs multiple differential abundance analysis methods and through a consensus strategy returns a set of differentially abundant features.
feature-selection rstats bioconductor microbiology microbiome biomarker-discovery phyloseq differential-abundance-analysis
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Oct 16, 2024 - R
Secondary analysis of Proteomics data in R, developed by the University of Arkansas for Medical Sciences for the NIH NIGMS Sandbox project.
aws bioinformatics jupyter-notebook gcp data-visualization cloud-computing proteomics mass-spectrometry data-preprocessing r-programming differential-abundance-analysis nih-nigms-sandbox
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Dec 2, 2024 - Jupyter Notebook
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