Directed evolution of proteins in sequence space with gradients
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Aug 6, 2024 - Jupyter Notebook
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directed-evolution
Here are 11 public repositories matching this topic...
Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2024).
protein-structure protein zero-shot protein-engineering graph-neural-networks directed-evolution mutant-prediction
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Oct 24, 2024 - Python
Protein Design by Machine Learning guided Directed Evolution
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Jul 27, 2024 - Python
Latent-based Directed Evolution guided by Gradient Ascent for Protein Design
evolutionary-algorithm gradient-ascent variational-autoencoder protein-language-model directed-evolution protein-optimization
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Apr 16, 2024 - Python
Bayesian optimization with prescreening of search space via supervised outlier detection
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Mar 27, 2023 - Python
Computational model of laboratory directed evolution + experiments.
evolutionary-computation digital-evolution directed-evolution artificial-selection parent-selection-algorithms
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Jun 29, 2022 - Python
Directed Evolution in Silico
bioinformatics julia protein-sequences dna-sequences protein-engineering rna-sequences ml-de directed-evolution
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May 13, 2024 - Julia
Learning to Solve Multiresolution Matrix Factorization by Manifold Optimization and Evolutionary Metaheuristics
evolutionary-algorithms wavelet-transform graph-convolutional-network graph-wavelet matrix-factorisation multiresolution-analysis stiefel-manifold-optimization directed-evolution
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Nov 24, 2024 - Roff
Generates randomly generated fastQ files from a template and upstream sequence.
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Apr 4, 2024 - Python
Calculates the probability of finding the top variant in a library of sequences.
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Mar 29, 2024 - Python
Protein engineering with large language models
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Nov 25, 2024 - Jupyter Notebook
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