A light and flexible R package to evaluate GWAS-based gene prioritization methods for complex traits.
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Nov 27, 2019 - R
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gene-prioritization
Here are 7 public repositories matching this topic...
Indonesia Exome Rare Disease Variant Discovery Pipeline. Phenotype analysis part available on Streamlit and PyPi
gene-prioritization
phenotype-exchange-format
phenotype-ontologies
exome-sequencing-analysis
rare-variant-analysis
phenotype-prediction
rare-disease
phenotype-genotype-information
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Aug 6, 2024 - Jupyter Notebook
Gene prioritisation tool using a weighted network methodology based on Gene Ontology and Human Phenotype Ontology annotations to infer closely related genes to given genes of interest.
gene-ontology
gene-prioritization
random-walk-with-restart
ppi-networks
human-phenotype-ontology
omnipath
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Nov 2, 2022 - R
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May 29, 2022 - Jupyter Notebook
EDA of different databases to extract IBD-relevant genes, their coverage in a 10X Genomics spatial transcriptomics panel and the main cell types and tissues related to these genes.
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May 18, 2024 - Jupyter Notebook
DepRanker: A gene impact score calculator (prioritization method) for RNAi / CRISPR screen results
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Dec 22, 2019 - Python
Software supporting work on "Gene prioritization coupled with next generation sequencing data processing pipeline". This project will be moving to the next level. It doe's not have an associated website yet.
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Jan 4, 2020 - Perl
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